Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 288 3e-72 seq29 221 3e-52 seq25 91.5 4e-13 >seq6 Length=1241202 Score = 288 bits (318), Expect = 3e-72 Identities = 636/944 (67%), Gaps = 16/944 (2%) Strand=Plus/Plus Query 363363 TTATGAGAAGGATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACC 363421 |||||| ||| | || ||||| || ||| || | ||| ||| |||| || || |||| Sbjct 393451 TTATGACCGGGACTTTGATTATGACTACTTT-GGCTTTAAAACGCTGGAAAAGTCGTACC 393509 Query 363422 TATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTA 363481 | | || || || | || | || ||||| ||||| ||| | |||||||| || | Sbjct 393510 TTCTTAAGATGAACGGGGTAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAA 393569 Query 363482 TTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCT 363540 |||||||||| | | |||| || ||| | || || || || || | || ||| Sbjct 393570 TTGGTATCCACAAAGAGAACATTGACGCGGCGCTGGAGACCTACAATCTCAT--GTCGCT 393627 Query 363541 CGTG-TATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGAT 363599 | | |||||||| || ||||| ||| | | |||||| || || | || || | Sbjct 393628 CAAACTTTTCACGCATGCTACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACT 393687 Query 363600 GTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT 363659 || || ||||| || || | |||||||| || |||||||| || |||| ||||| || Sbjct 393688 CTCCTCCTGCTTCCTCCTGACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCT 393747 Query 363660 TAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGT 363719 ||| | || ||| |||||||| ||| || || ||||| ||||| |||||||| | Sbjct 393748 CAAGCAATGCGCTGCCATTTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACAT 393807 Query 363720 TCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCAT 363779 ||| || | || |||||||| || | || ||| || || | || || || Sbjct 393808 TCGGGCGCGAGACTCCTACATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTAT 393867 Query 363780 GCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || || || || |||| || | |||||||||||||| ||||| |||||||| || Sbjct 393868 GCTCCGCGTTTTCAACGATACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGG 393927 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 | || || || || || ||||| ||||| || || ||||| || || || || || Sbjct 393928 TTCCTTCGCCATCTACCTAGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCG 393987 Query 363900 GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 || ||| || || ||| ||||||||||||||||||||| || || ||| | Sbjct 393988 TAAGAACCACGGCAACGAGTTGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCC 394047 Query 363960 TGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 |||| || ||| |||||||||| | | | ||||| || |||||||| |||| Sbjct 394048 CGACCTGTTCATGCGGCGCGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGA 394107 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 || || || || | || || || || || || | | || |||| | || || Sbjct 394108 GTGCCCGGGCCTGGCGGACGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGA 394167 Query 364080 -ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 | | |||||| || || ||| ||| || ||| |||| ||||| || || ||| Sbjct 394168 GAAGAGTGGGAAA-GCACGCAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGATTCTGG 394226 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | || ||| | |||||||| || || || ||| ||| ||| || | ||||||| || | Sbjct 394227 ACTCCCAGGTGGAGACAGGCACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAAT 394286 Query 364199 CCAACCAGCAGCACCTTGGTA----CAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 | ||||||||| || | || | ||| ||| | ||| || || || ||||| || Sbjct 394287 CAAACCAGCAGAACTTGGGCACCATCAAATCATC----CAATCTGTGCACGGAGATCATC 394342 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTC 364298 || ||||| | ||||| ||| || || || ||||| || || Sbjct 394343 GAGTACACGTCGCCCGATGAGGTCGCGGTCTGCAACCTGGCCTC 394386 >seq29 Length=316797 Score = 221 bits (244), Expect = 3e-52 Identities = 575/869 (66%), Gaps = 6/869 (1%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || ||||||||| | ||| | |||| ||||| ||||||||||| | |||| | Sbjct 131630 GTGGAGCGCCCGCAGTACATGCTTCTGCGCGTTGCCCTTGGTATCCATGGAGAGGATCTG 131571 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAG-TGCTCGTGTATTCACGCACGCCACGCC 363563 ||||| | || || || |||| | || | ||| |||| |||||| | || Sbjct 131570 CCCGCCGCCTTGGAGACCTACGAGCTCATGAGCAACAAGTG-GTTCATCCACGCCTCCCC 131512 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || | | | | || || || ||| || |||||||| || ||||| || || || Sbjct 131511 TACTCTTTTCCACGCGGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCAT 131452 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 | | | || || |||| ||||||| ||||| || ||| | || || | || ||| Sbjct 131451 GCAAGCGGACTCGATCGTTGGTATCTACGACACGCTGAAGCAGTGCGCCGTGATAAGCAA 131392 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCG 363743 | || || ||||| || | ||| ||||||| | || || || | |||||| Sbjct 131391 GGCGGCGGGGGGAATCGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACATTAA 131332 Query 363744 CGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||| | ||||| | || || ||||| |||||||| | || || ||| || | Sbjct 131331 GGGCACGAAGGGGACGAGC-AACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCACGG 131273 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || | ||||| |||||||| ||||| ||| | |||||| ||||| || || || |||| Sbjct 131272 CGCGCTACGTGGACCAGGGGGGAGGCAAGAGGCCAGGGGCCTTTGCCATCTACCTGGAGC 131213 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || || || ||||| | || || || ||||| ||| ||||| ||||| Sbjct 131212 CGTGGCACGCGGACATCTTTGAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGGAGG 131153 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 ||| || || ||||| ||||||| ||| ||| || | |||| || ||| || | |||| Sbjct 131152 CGCGGGCGCGGGATCTCTTCTATGGACTATGGATTCCCGACCTCTTCATGGAGAGGGTGG 131093 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 ||| | | || ||||| ||| | || || | | || || ||||| | || Sbjct 131092 AGGAGGATGGGACCTGGTCCCTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACTGCC 131033 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGG-AAAGGCTCGTAAG 364101 || | | || | ||||| ||| || ||| ||||| || | | ||| Sbjct 131032 ACGGCCAGGCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGCCGAGTCAAG-AAG 130974 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 ||| | | || ||| | | |||||||||||| |||| |||||||||||||| || || Sbjct 130973 ACAGTGCGTGCTCAGGACTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCACG 130914 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||||| ||| ||||||| || | ||||||| ||| |||||| ||| || | || || Sbjct 130913 CCCTACATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCACC 130854 Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || || || || || |||||||| | ||||||| | || ||| || Sbjct 130853 ATCAAGTCCTCGAATCTGTGCACCGAGATCGTCCAATACACGAGCGCGGAAGAGGTGGCG 130794 Query 364282 GTATGTAACCTTGCGTCGATCGCGCTTCC 364310 || || ||||| |||||| | | ||| || Sbjct 130793 GTCTGCAACCTGGCGTCGGTGGTGCTACC 130765 >seq25 Length=633890 Score = 91.5 bits (100), Expect = 4e-13 Identities = 184/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 111606 ATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTG 111665 || ||| |||||||| ||| ||||| ||| | || |||||||| | ||| Sbjct 456029 ATCAAGGACAACCCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTG 456088 Query 111666 GAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATG 111725 | ||| ||||| || || || ||||| | | ||||| || || || ||||| | Sbjct 456089 GGAAAGATGGCCCTGCCGCCGTGTCACATGTTTTGCCAATTCTACGTGGCAGACGGAGAG 456148 Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 || || || || ||||||||||| || || || || || | ||||| ||||| |||||| Sbjct 456149 CTCTCTTGTCAGATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATT 456208 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAA 111845 || ||||||||| | || |||| | ||||| | | ||| | || || Sbjct 456209 GCCTCTTACGCACTCTTGACACGCTTGGTAGCTCAAGTCTGTGGCTTGAAAGCCGGAGAG 456268 Query 111846 TTCATTCACGTTATCGGAGATGCGCATGTTTAC 111878 ||||||||| || || ||||| ||||| ||| Sbjct 456269 TTCATTCACACGATTGGGGATGCACATGTGTAC 456301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303342177734888