Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq29 199 4e-46 seq6 125 7e-24 seq4 122 8e-23 seq3 118 1e-21 seq9 89.7 5e-13 >seq29 Length=316797 Score = 199 bits (220), Expect = 4e-46 Identities = 603/917 (66%), Gaps = 17/917 (2%) Strand=Plus/Plus Query 145630 CGACGCCAAATTACAAACTGCCGTCTCCTCGGCG-TCGCTGTATTGTACGATCTCGGCGC 145688 |||||||| || || || ||| ||| || ||| ||| ||||||| |||||||||| || Sbjct 130776 CGACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCG-TGTATTGGACGATCTCGGTGC 130834 Query 145689 ACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGT 145748 ||| ||| | |||||||| |||| || || || || || ||| |||||| |||| Sbjct 130835 ACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGT 130894 Query 145749 CCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTG 145806 ||||||| |||||||| || ||| ||||| | ||||| |||| ||| |||| Sbjct 130895 CCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAAC--CA 130952 Query 145807 CAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAG 145866 ||||||||| |||||||| || || | ||||||||| ||||||||| || || Sbjct 130953 CAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAG 131012 Query 145867 CTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAG 145926 ||| || || |||| ||| || | || ||||| |||| | ||||||||| || Sbjct 131013 GTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAG 131072 Query 145927 CGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTA 145986 ||||| || | | | || | |||||| || | || || | ||| || | || Sbjct 131073 GGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATA 131132 Query 145987 CATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT 146046 | | || ||||| ||||| || ||| | || | ||||| Sbjct 131133 GAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTC 131192 Query 146047 ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CC 146103 | ||||||||||||||||||| || | |||| ||| | ||| ||| | ||| || Sbjct 131193 AAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTCC 131252 Query 146104 ACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCT 146163 ||||||||||||| || || || || ||||| | | ||||||| | | ||| | Sbjct 131253 CCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCG-T 131311 Query 146164 GGCTACG--CCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTC 146221 ||| || || ||||| || || || |||| | | ||| | | || || Sbjct 131312 TGCT-CGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAG 131370 Query 146222 ACGCCGA-GACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280 | ||||| || |||||| |||| ||| ||||||| | ||||| |||||||| Sbjct 131371 AGGCCGATTCCCCCCGCCG-CCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGAT 131429 Query 146281 GCCGTCAAT-GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCG 146339 || | || | ||||| | ||| | || || ||||||||| ||||||||| | Sbjct 131430 ACCAACGATCGAGTCCGCTT-GCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 131488 Query 146340 GCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCC 146399 |||| ||||| ||| | || ||| ||||| | ||| || |||||| | | Sbjct 131489 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 131548 Query 146400 GATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGA 146459 || || || | ||| | | | || || ||||| || || | || ||||||| | Sbjct 131549 CGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCAACGCGCAGAA 131608 Query 146460 GCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCA 146519 |||||| || || |||||| |||| | | ||||| | ||| ||| | |||| Sbjct 131609 GCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCTCGTTCCA 131668 Query 146520 GGGTTTTGTATCCGAAA 146536 ||||||| | |||||| Sbjct 131669 TGGTTTTGAAGCCGAAA 131685 >seq6 Length=1241202 Score = 125 bits (138), Expect = 7e-24 Identities = 741/1167 (63%), Gaps = 59/1167 (5%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || ||| || ||||| |||||||| ||||| | |||| ||| || || Sbjct 394984 GTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGT 394925 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| || |||| ||||||||| ||||||||||| || || || | |||||| |||||| Sbjct 394924 GAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGG 394865 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA----- 145225 || | ||||| ||| ||||| | ||||||| || | ||| | |||||| Sbjct 394864 TGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCA---CTT--TGAAGCGTAAACCG 394810 Query 145226 CCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 |||| ||||| | | | || ||||| ||||||||||| | || || | ||||| | Sbjct 394809 GCCCAGTCCCAGCGAGTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCCCTTG 394750 Query 145286 CTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-T 145344 || |||| ||| |||| ||| ||| | | |||| ||| || | Sbjct 394749 CTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTCCTTCATCGCGATCTC-CATCGA 394691 Query 145345 CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTC 145404 |||||| | || ||||| || || |||||| ||| | | |||| ||| || || || Sbjct 394690 CGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTCCTTGTTAAGCTGCTGGGCCTC 394631 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 |||| | || | |||| | | || || || || | ||||| | || | Sbjct 394630 CGGAGACTCGAATGGGAATCGCATCTTGATGAAGGCGTCCGCCAAACCCTGCACGCCGAT 394571 Query 145465 GCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACG 145524 |||||||| || ||| |||||| ||| || ||||| ||| || || Sbjct 394570 CCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGCTTCCTCGACAGGGTAGTAGTTGAT 394511 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 ||| || | |||| |||||| || ||||| || || | || | | | Sbjct 394510 GTCTATGACGCGGTTCAGGTTTCGTGTCACCACCTTCGTGATTTCATACAGCCGCTGCAG 394451 Query 145585 GTC-AAACCGAGCCTCGT----CAAC--GACCACACAGCT--ATTGACGGCG-------- 145627 ||| || | || || | | || || | | | || ||| ||| Sbjct 394450 GTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCCCTCCCCTTGGATGAATGCGGAAAGGTT 394391 Query 145628 -ATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGG 145685 | || |||| || || || || ||| || |||| || |||| | | |||||| | Sbjct 394390 CACGGAGGCCAGGTTGCAGACCGCGACCTCATCGGGCGACG-TGTACTCGATGATCTCCG 394332 Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACG 145745 ||||| |||| |||||||||| |||| || ||||| || |||| |||||| | Sbjct 394331 TGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGG 394272 Query 145746 CGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAAC 145802 |||||||| | |||||||| || ||| ||||||||||| | |||| || || | Sbjct 394271 CGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACC 394212 Query 145803 GGTGCAAGTCCTGCGC---ACGCACCTGCTGC-TGGTAGCGGCCCTCTTCTTCGTATTTC 145858 | || | ||| || | |||| ||| || | | | |||||| ||||| | Sbjct 394211 AGAGC---TGCTGGGCCTTAATAACCT--TGCGTGCTTTC-CCACTCTTC-TCGTAGCTG 394159 Query 145859 CTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGA 145918 |||||||| | |||| | ||| | || | |||||| || |||| |||||| Sbjct 394158 GCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGG 394099 Query 145919 CACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCAC 145978 || | || ||||| | |||| | | |||||| ||| |||| || ||| ||| Sbjct 394098 CAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAG 394039 Query 145979 AGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTT---CA 146033 || ||||| | || | || || | | ||| ||| | || || || ||| || Sbjct 394038 AGGGCGTAGAACAGATCACGTGCACGCTCCAA--CTC-GTTGCCGTGGTT--CTTACGCA 393984 Query 146034 AATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTT 146093 | || | | ||||||| || ||||| || || | |||| ||||| || || | Sbjct 393983 GGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCT 393924 Query 146094 TTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGG 146150 | || ||| || |||||||| |||| || || | | ||| || ||||| | ||| | Sbjct 393923 TGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAG 393864 Query 146151 GCTCGACGCCGCTGGCTACGCCGTTCG 146177 | ||| |||| ||| |||||||| Sbjct 393863 GTACGATGCCGTTGGAGGTGCCGTTCG 393837 >seq4 Length=1364975 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| ||||| || ||||||| ||| ||||| || ||||||||||| || | Sbjct 829195 CCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGAC 829254 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || | || | |||||||| || || ||| Sbjct 829255 AACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGG 829314 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || |||||||| | | ||| | || || ||| ||| | | Sbjct 829315 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACG 829374 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || || ||||| Sbjct 829375 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq3 Length=1384164 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| |||| || || || | ||| ||||| || ||||||||||| || | Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| |||||| | |||| |||||||| || || || Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | | || | |||||| ||| ||||| Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 138011 >seq9 Length=1164708 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| || | || | |||||||| || || ||||| || || ||| Sbjct 608021 TCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTG 608080 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | | ||| | || ||| ||| ||| | ||| | |||| | Sbjct 608081 TCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATG 608140 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || || || || || || || |||||||| |||||| || Sbjct 608141 GTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 608179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008764290560