Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq3 89.7 4e-13 >seq4 Length=1364975 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||| || || ||||| || || ||||||||||| | || || |||| Sbjct 829209 CAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTC 829268 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || |||||| |||| || ||||| || || || | ||||| ||||| Sbjct 829269 CTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTC 829328 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| | ||||||||| | | | ||||| | ||||||| || | |||||||| Sbjct 829329 CTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGT 829388 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || ||||| || ||||| Sbjct 829389 CTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq3 Length=1384164 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| |||| || ||||| || || ||||||||||| | || || |||| ||| Sbjct 138220 ACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTCC 138161 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | || || || || |||| || ||||| || || || | |||||| ||||| | Sbjct 138160 AGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGA 138101 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || | |||||||| | | | || |||| |||||| |||| |||||||| || Sbjct 138100 ATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTTG 138041 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| || |||||||| Sbjct 138040 CCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405084623085160