Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 138 8e-28 seq23 122 6e-23 seq4 105 4e-18 seq9 89.7 3e-13 seq684 82.4 5e-11 >seq3 Length=1384164 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||| ||||| ||||| || | || ||| || ||||| ||||| |||||| Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || ||||| || || |||||||| || ||||||| ||| Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| ||| |||||||||||||| | || ||||| | || || Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || || || ||||||| ||| || ||||| ||||||||| || Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTT 138008 >seq23 Length=719191 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||||| | |||||||| || |||||| | Sbjct 355059 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCAT 355000 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 354999 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 354965 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 353033 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 352974 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 352973 ACCGATATTTAGCCTTA 352957 >seq4 Length=1364975 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | ||| |||| |||||||| || || ||| || ||||| ||||| ||||| Sbjct 829194 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 829253 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| || |||| || | || || || ||||| || ||||| || ||||| | ||| Sbjct 829254 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 829313 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| ||| || ||||||||||||| || || || | || || Sbjct 829314 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCAC 829373 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||||| || || || || || ||||| Sbjct 829374 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq9 Length=1164708 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || |||||||| || ||||| || ||||| | ||||| || || |||||| || Sbjct 608030 TGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTGTCCTGGATC 608089 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 |||||||||||||||| | || || | || || || || ||||| || || ||| Sbjct 608090 TTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATGGTCTTGCCC 608149 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 |||| ||| || ||||| || |||||| Sbjct 608150 GTCAGGGTCTTAACGAAAATTTGCATG 608176 >seq684 Length=114989 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||| | |||||||||||| Sbjct 50299 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTTAGC 50240 Query 20020 CTT 20022 ||| Sbjct 50239 CTT 50237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||| | |||||||||||| Sbjct 112511 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTTAGC 112570 Query 20020 CTT 20022 ||| Sbjct 112571 CTT 112573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944407796404