Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02-
18] 684 sequences; 27,589,342 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 8e-28
seq23 122 6e-23
seq4 105 4e-18
seq9 89.7 3e-13
seq684 82.4 5e-11
>seq3
Length=1384164
Score = 138 bits (152), Expect = 8e-28
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||| ||||| ||||| || | || ||| || ||||| ||||| ||||||
Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || | || ||||| || || |||||||| || ||||||| |||
Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || ||||| ||| |||||||||||||| | || ||||| | || ||
Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| ||||| || || || ||||||| ||| || ||||| ||||||||| ||
Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTT 138008
>seq23
Length=719191
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||| |||||||||| | |||||||| || |||||| |
Sbjct 355059 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCAT 355000
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 354999 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 354965
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 353033 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 352974
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||||||
Sbjct 352973 ACCGATATTTAGCCTTA 352957
>seq4
Length=1364975
Score = 105 bits (116), Expect = 4e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || | ||| |||| |||||||| || || ||| || ||||| ||||| |||||
Sbjct 829194 ACCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGA 829253
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| || |||| || | || || || ||||| || ||||| || ||||| | |||
Sbjct 829254 CAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGG 829313
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| || || |||||| ||| || ||||||||||||| || || || | || ||
Sbjct 829314 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCAC 829373
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || ||||||| || || || || || |||||
Sbjct 829374 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421
>seq9
Length=1164708
Score = 89.7 bits (98), Expect = 3e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231
|| || |||||||| || ||||| || ||||| | ||||| || || |||||| ||
Sbjct 608030 TGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTTGTCCTGGATC 608089
Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291
|||||||||||||||| | || || | || || || || ||||| || || |||
Sbjct 608090 TTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAATGGTCTTGCCC 608149
Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318
|||| ||| || ||||| || ||||||
Sbjct 608150 GTCAGGGTCTTAACGAAAATTTGCATG 608176
>seq684
Length=114989
Score = 82.4 bits (90), Expect = 5e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019
|||||||||| ||||||||||||||||| |||| ||||||||| | ||||||||||||
Sbjct 50299 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTTAGC 50240
Query 20020 CTT 20022
|||
Sbjct 50239 CTT 50237
Score = 82.4 bits (90), Expect = 5e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019
|||||||||| ||||||||||||||||| |||| ||||||||| | ||||||||||||
Sbjct 112511 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCATTCAGTAATATTTAGC 112570
Query 20020 CTT 20022
|||
Sbjct 112571 CTT 112573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944407796404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |