Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 143 2e-29 seq3 125 6e-24 seq9 102 7e-17 seq29 86.0 5e-12 >seq4 Length=1364975 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| |||||||| || | || || || || |||| || || ||||| ||| Sbjct 829422 GATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAG 829363 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || || || ||||| |||||||||||||| || || ||||| Sbjct 829362 TGACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCA 829303 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || ||||| || || ||| | ||||| ||||| | || || ||||| Sbjct 829302 GCAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAA 829243 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| || ||| ||||||| || |||||||||| || ||| Sbjct 829242 CATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGGT 829194 >seq3 Length=1384164 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| | || || || ||| | Sbjct 138012 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 138071 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||| ||||||||||||||||| ||||| |||||||| Sbjct 138072 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 138131 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | || || ||||| | || || |||||| Sbjct 138132 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 138191 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || ||| | || || || ||||| ||||| || || Sbjct 138192 ATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGG 138238 >seq9 Length=1164708 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || | || || || || | ||| | || ||||| ||| | Sbjct 608175 ATGCAAATTTTCGTTAAGACCCTGACGGGCAAGACCATTACTTTGGACGTGGAGCCCAGC 608116 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || || ||||||||||| || || || ||||| Sbjct 608115 GACACCATTGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGGATCCCCCCTGATCAG 608056 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 || || || || ||||||||||| ||| | |||||| Sbjct 608055 CAGCGCCTCATTTTTGCCGGCAAGCAGCTCGAGGAT 608020 >seq29 Length=316797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 |||| | ||| || |||| ||||| ||| || ||||||||||| | || ||| | Sbjct 130814 TGTATTGGACGATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGT 130873 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 | || |||| ||||||||| || ||||||| |||||| ||||||||||| || | |||| Sbjct 130874 TGCTCTTCAGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCG 130933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724501042460