Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 100 6e-16 seq6 86.0 1e-11 seq9 84.2 4e-11 >seq13 Length=890907 Score = 100 bits (110), Expect = 6e-16 Identities = 208/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 218520 CTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAG 218579 |||| || || |||||||||| || ||||| | || |||| || || ||| Sbjct 595432 CTTCGTCAACCAGGAGCTCATCCTCTTCTCCATGGCGGACAACCAGCGCTCCATCCCCCA 595491 Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 | || ||||||| || ||||| | ||||| || | ||||||||| || || ||||| Sbjct 595492 CCTGATGGATGGGCTGAAGCCGGCCCAGCGGAAAGTTCTCTTTGCCTGCTTTAAACGGAA 595551 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 ||| |||| ||||||||||| ||| | |||| || || ||||| || | ||| Sbjct 595552 CCTCAAGAAAGAGATTAAGGTCGCCCAGCTGGCTGGCTACGTCTCCGAGCACTCGGCCTA 595611 Query 218700 CCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||||||| ||| | || || | || | || || |||||||| || | | ||| Sbjct 595612 CCATCACGGCGAG--GCCTCCTTGAACGGGACGATCGTGGGCATGGCCCAAAATTTCGTG 595669 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 ||| |||||||| || || ||| | ||| ||||| || | || | |||| Sbjct 595670 GGCTCCAACAACATTGGTTTCCTCTACCCGAGCGGGCAGTTCGGCACGCGGATCATGGGG 595729 Query 218818 GGAAAGGA 218825 || ||||| Sbjct 595730 GGGAAGGA 595737 >seq6 Length=1241202 Score = 86.0 bits (94), Expect = 1e-11 Identities = 263/404 (65%), Gaps = 7/404 (2%) Strand=Plus/Minus Query 294102 CTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCA 294161 ||| || ||| ||| |||| | | |||| ||| | || || | |||||| ||||| Sbjct 394168 CTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCA 394109 Query 294162 CTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATC 294221 ||||| ||| || || ||||| | | || ||||||||||| |||||| || || Sbjct 394108 CTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTC 394049 Query 294222 ATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGATTACG 294281 ||| | ||||| |||| | || || ||| ||| | || || || Sbjct 394048 GGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTT 393989 Query 294282 ACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGA 294341 ||| ||| |||||| || | |||||| | ||| ||| || || || | || ||||| Sbjct 393988 ACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGA 393929 Query 294342 CCCCTT---CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAG 294398 ||||| | ||| ||| ||||||| | ||||| | || || || || || Sbjct 393928 ACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAG 393869 Query 294399 CATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATCT--CAGCCCCGCGCCCG 294456 |||||| |||||||| | ||| || || | ||| ||||| | || | |||||| Sbjct 393868 CATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCC-- 393811 Query 294457 CGAATGTCGCTCATGTGGAGACCAATGCCACCGCCATACTTGGA 294500 ||||||| | ||| | ||||| ||||| || | ||||| Sbjct 393810 CGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGA 393767 >seq9 Length=1164708 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 || || || ||||| || |||||||||||||| ||||| || ||| |||||| | Sbjct 365339 GTGATCGGGCCCAACGGGGCGGGTAAGTCTACGGCCATCAAGCTCTTGATCGGCGAG-CT 365281 Query 280233 CAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 | ||| | ||||| | || ||||| || |||||||| |||| ||||| || || Sbjct 365280 GACGCCGTCGGAGGGTGTCATTACCAAGCACCCGAACATGCGCCTGGCCTACGTGGCCCA 365221 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||| ||| |||| | ||||| ||| || || ||| || ||| ||||| ||| Sbjct 365220 GCACGCCTTCTTCCACCTGGAGAAGCACTTGAACGAGACGCCCGCCCAGTACATCATGTG 365161 Query 280352 GCG 280354 ||| Sbjct 365160 GCG 365158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027827792295244