Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 170 4e-37 seq9 122 2e-22 seq5 116 7e-21 seq1 93.3 8e-14 >seq3 Length=1384164 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | |||||| |||||||| | || |||||||| || ||||| || || || Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | || || ||||| ||| Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 ||||| |||||||||||||||||| ||| || |||||||| || |||| || || Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATC-GCTGGGCTCGAC 138060 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| |||||||||||||| |||||||| Sbjct 138059 ATCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 138012 >seq9 Length=1164708 Score = 122 bits (134), Expect = 2e-22 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||||||||||||| || | |||||| ||||| || ||||| | || || || || || Sbjct 608008 GAGTGTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGG 608067 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 || || |||||||| || |||||| ||| || ||| |||||||| ||| | || | Sbjct 608068 GATCCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTC-GCTGGGCTCCA 608126 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 608127 CGTCCAAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 608175 >seq5 Length=1358244 Score = 116 bits (128), Expect = 7e-21 Identities = 171/239 (72%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 173038 CAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCT-GAAGCAGG 173096 |||||| |||||||| | || || |||| ||| || |||| || |||| ||| Sbjct 1046576 CAAGTTTGTCAAGGGCAACATCTGTTCCTCTGACCTCGTGAACTACGTACTTGAAG-AGG 1046634 Query 173097 AAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTA 173156 || | ||||||||||| ||||||||||| || |||||||| ||||||||| ||||| | Sbjct 1046635 AAGAGATTGACACGATCATGCACTTTGCGGCCCAGACCCACGTGGACAACAGCTTCGGCA 1046694 Query 173157 ACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGA 173216 |||| | | || || ||||||| | ||||| ||||| ||| |||| |||||| Sbjct 1046695 ACTCCTTCTCCTTCACGCAGAACAACATTCTGGGGACGCACGTCCTCTTGGAGAGCGCGA 1046754 Query 173217 GGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAG 173275 || | | || |||| || ||| | ||||| || |||||||| ||||| ||| Sbjct 1046755 AAGTCCA---CAACATCAAGCGCTTTATCCACGTGTCCACGGACGAAGTGTACGGGGAG 1046810 >seq1 Length=1546440 Score = 93.3 bits (102), Expect = 8e-14 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 173088 TGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACT 173147 || || ||||| ||||||||||||| ||||| | || ||||||||||||||||||||| Sbjct 476433 TGGAGGAGGAAGAAATTGACACGATCGTGCACCTGGCGGCGCAGACCCATGTGGACAACA 476492 Query 173148 CGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGG 173207 || || ||||| | | ||||| ||||||| | | || || ||||| || ||| Sbjct 476493 GCTTTGGCAACTCCTTCTCCTTTACGCAGAACAACATTTTAGGTACGCACGTGCTTTTGG 476552 Query 173208 AATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTAT 173267 | | || | | ||||| ||| ||||||| | | || || || ||||| || | Sbjct 476553 AGAGTGCCAAAGTGCATGGC---ATCCGGCGGTTCGTACACGTCTCCACTGACGAGGTGT 476609 Query 173268 ACGGCGA 173274 |||| || Sbjct 476610 ACGGGGA 476616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921614520128480