Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 125 2e-23 seq4 96.9 8e-15 >seq3 Length=1384164 Score = 125 bits (138), Expect = 2e-23 Identities = 147/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | ||||||||||||||||| | || ||||||||||| Sbjct 138202 TCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAA 138143 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCAC 288398 || || ||||| ||| || ||| || || || || || || || ||| |||| ||| Sbjct 138142 ATTAGGCGCTGCTGA---TCGGGGGGAATGCCCTCCTTGTCTTGAATCTTTTGCTT-CAC 138087 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | |||||| | || || || | ||||| ||||| || ||||| ||||| Sbjct 138086 ATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATGGTCTTGCCCGTCAGGGTCTT 138027 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 138026 GACGAAGATCTGCAT 138012 >seq4 Length=1364975 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | | |||||| ||||| || | || || || || || Sbjct 829231 TCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAA 829290 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| ||| | ||||| || || || ||||| || ||| ||||| || Sbjct 829291 ATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTC 829350 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||||||||| ||||| || ||||| ||||| || Sbjct 829351 TCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACA 829410 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 829411 AAGATTTGCAT 829421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644061803752