Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 168 8e-37 seq29 132 6e-26 seq1 125 9e-24 seq4 107 2e-18 seq13 96.9 4e-15 seq9 82.4 9e-11 >seq6 Length=1241202 Score = 168 bits (186), Expect = 8e-37 Identities = 584/902 (65%), Gaps = 23/902 (3%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 |||||||| || || ||||| |||| ||| || || |||||||||||||||| || Sbjct 394350 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 394291 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 ||||| || ||| || || |||||| | |||||||| ||||| || |||||| ||| Sbjct 394290 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 394231 Query 114632 GACTTGAGAATAGCCTTCCAGACATCGGCGGCTGG--CACAGTGGCGTTG---GCTCGCC 114686 || | ||||| || ||||| || ||||| | | | | ||| ||| || Sbjct 394230 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 394176 Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC-CACGGCCTCTGAGAGC 114745 | || |||||| | | |||||| | |||||| || || ||| | || | || Sbjct 394175 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCAC-ACGTCCGCCAGG 394117 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 || || || | ||||| || || ||||| | || | ||| || ||| |||| Sbjct 394116 CCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATG 394057 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTC--TTCATCCC 114863 || ||||| || ||||||| || |||| ||||| || || ||| | || | | Sbjct 394056 AACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACG--TGCACGCTCCAACTCGTTGC 393999 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || ||||| |||| || || | ||| || || ||||| || || ||||| | Sbjct 393998 CGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGA 393939 Query 114924 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 |||| || ||||| || | || |||||| || || | || || | || | Sbjct 393938 TGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGA 393879 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGA 115038 | ||||| ||||| || | ||| || | || ||| || | || |||| || ||| Sbjct 393878 AAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGT 393819 Query 115039 CTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 115098 || || | | | |||||| | ||||| || || || | || || || Sbjct 393818 CT--CGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGC 393761 Query 115099 CGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAG 115158 ||||| | | |||| || ||||||| |||||||| ||||| |||| | | | || Sbjct 393760 AGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAG 393701 Query 115159 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 115218 ||||||| || | ||| |||| ||||| || || ||||| || || || || || || Sbjct 393700 GAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATG 393641 Query 115219 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278 |||| | | ||||| || ||||||||||| | ||| ||||| || Sbjct 393640 CGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTT 393581 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 115338 ||| ||||| || | || ||||| | ||||| ||||| ||||| | | || | Sbjct 393580 GTGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTT 393521 Query 115339 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTC 115398 | | | | ||||| ||| |||| || || | ||||| || || | ||| |||| Sbjct 393520 CATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 393461 Query 115399 CC 115400 || Sbjct 393460 CC 393459 >seq29 Length=316797 Score = 132 bits (146), Expect = 6e-26 Identities = 574/895 (64%), Gaps = 12/895 (1%) Strand=Plus/Plus Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || |||| ||| || ||| |||||||||||||||| ||| || ||| | Sbjct 130825 ATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGG 130884 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || || |||||||| |||||||| ||||| |||||||| | || || | | || Sbjct 130885 TTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATG 130944 Query 114644 GCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 114703 || ||| | || || |||| || ||| |||| ||||| ||||| ||| Sbjct 130945 GCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTT 131004 Query 114704 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 114763 || ||| | || | | || | || | ||| || || || ||| || Sbjct 131005 AAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGA 131064 Query 114764 CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAG 114823 || | ||| ||||| ||| ||||||| || | || |||||||||||| || ||||| Sbjct 131065 CACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCAT 131124 Query 114824 AGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 114883 || | ||||||||||||| || || || || | || || || |||| ||| Sbjct 131125 AGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCC 131184 Query 114884 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC---CTTA 114940 | | || | ||| |||||||||||||| |||||||| | || | | ||| | | Sbjct 131185 AGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTC 131244 Query 114941 CGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATG 115000 | || |||||| || || | ||| ||| | | || || | ||||| || | Sbjct 131245 TTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACC 131304 Query 115001 ATACCATCAGATTG-GCCATTTGTCCCCCGAATACGAGACTTATTG-GCTCTGACATCAT 115058 | ||| | | | | || || || ||| ||| || | || || | || | | Sbjct 131305 AGACCGT-TGCTCGTCCCCTTCGTGCCCTTAAT-GTAGGCGCCGTGCGCGCGGATGTTGT 131362 Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118 ||| | || || ||||| ||| ||| || ||||||| | | || || Sbjct 131363 GGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGT 131422 Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTG 115178 ||||||| || |||||||||| | | | || | |||||||| ||||| || | Sbjct 131423 CGTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCG 131482 Query 115179 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGAC 115237 | | || || |||| ||| || || || | |||||||||||| || | | | | Sbjct 131483 GGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTTGCTC 131541 Query 115238 ATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 115297 || ||||||||||||||| ||||||| | || || || || ||||| | | || Sbjct 131542 ATGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGCAACG 131601 Query 115298 CGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA-ACT 115356 |||| || |||||| || || |||| || | | ||| | || | | ||| || Sbjct 131602 CGCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTAGGCT 131661 Query 115357 CTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCTCTTCGTGACG 115411 | | |||| ||| |||| || ||||| ||||| ||| || | | ||||| || Sbjct 131662 CGT-TCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGC-TCGTGTCG 131714 >seq1 Length=1546440 Score = 125 bits (138), Expect = 9e-24 Identities = 255/375 (68%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 10786 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 10845 |||||| ||||| || |||||||| | ||| | ||| | || || || || || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 10846 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 10905 |||||||| | ||| || | | | || ||||| |||||||| |||| || || || Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 10906 GATGGTTTGTTCGCGTTCATCATTCGCG--GGCATACCACCCGCACTGCGTTGCTTACCG 10963 | ||| || || || || || ||| | |||| | | |||| | ||| || || Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGC--CCGCCCCGCGCTGACGGCCC 801254 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAACTTC 11019 ||||| ||||| || ||||| |||| ||| || || || | ||| | | ||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 801310 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT---TGGC 11076 || ||||| || || | | |||||| || ||||||||||| || ||||| | | | Sbjct 801311 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 801370 Query 11077 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11136 ||||| | ||||||||| ||| || || ||||||| |||| || || || || Sbjct 801371 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 801427 Query 11137 CTTCCCCGTCCCAGG 11151 ||| |||||||| || Sbjct 801428 CTTACCCGTCCCGGG 801442 >seq4 Length=1364975 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || ||||||||||||||||||||||||| || || || || ||||| ||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCG-ACTTTGTGTCAAA 126225 |||||||| || || || | | ||||| ||||| || |||| |||| ||| | Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGA-CGCGTACTTGCGGTCGCA 237726 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 |||| | |||||| ||||||| || ||| |||||||||| || || | || Sbjct 237725 CCACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAA 237666 Query 126286 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 ||| | | || || ||||| | |||||||| Sbjct 237665 GAGCTTGTGTTTCTCGGATGGGTTCTTGATGTA 237633 >seq13 Length=890907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 181/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 171904 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGAT 171963 ||| || || || ||||||| ||||| || || || || | ||| | |||| | || Sbjct 595741 CGCGTCCTTCCCCCCCATGATCCGCGTGCCGAACTGCCCGCTCGGGTAGAGGAAACCAAT 595682 Query 171964 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 172023 ||||| || |||| | | | | ||||| || ||||| | | |||| | || Sbjct 595681 GTTGTTGGAGCCCACGAAATTTTGGGCCATGCCCACGATCGTCCCGTTCAAGGAGGCCTC 595622 Query 172024 ACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTC 172083 ||||||||||||||||| | || | ||| || | |||| ||| || ||||| ||||| Sbjct 595621 GCCGTGATGGTAGGCCGAGTGCTCGGAGACGTAGCCAGCCAGCTGGGCGACCTTAATCTC 595562 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | |||||||||| | ||||| ||| | | || || | ||| | ||||| || || Sbjct 595561 TTTCTTGAGGTTCCGTTTAAAGCAGGCAAAGAGAACTTTCCGCTGGGCCGGCTTCAGCCC 595502 Query 172144 GTCGGCCATGTGCGCGATGGAACGCT 172169 || || ||| | |||||| |||| Sbjct 595501 ATCCATCAGGTGGGGGATGGAGCGCT 595476 >seq9 Length=1164708 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| |||| |||||||||||||||||| || || || || ||||||||||| ||| Sbjct 163755 GGCATGAGCCCCCTCTTCTTCAACCAGAAAATGGCGCAGAAGGATCCCGAGAAGAAAATT 163696 Query 126167 CCCTCCAC 126174 || ||||| Sbjct 163695 CCTTCCAC 163688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348492626720