Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6 526 2e-144 seq29 217 1e-51 >seq6 Length=1241202 Score = 526 bits (582), Expect = 2e-144 Identities = 1248/1869 (67%), Gaps = 50/1869 (3%) Strand=Plus/Plus Query 93716 ATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCA 93775 |||| || ||||||| ||| ||||| ||||| ||||||||||| || |||||| | || Sbjct 393468 ATTATGACTACTTTGGCTTTAAAACGCTGGAAAAGTCGTACCTTCTTAAGATGAACGGGG 393527 Query 93776 GGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACG 93835 ||| ||||| || || || || | ||||| || || || || || ||| | Sbjct 393528 TAGTTATGGAGCGCCCCCAGCACATGATCATGCGTGTGGCAATTGGTATCCACAAAGAGA 393587 Query 93836 ACAT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 |||| | || | || | | | || |||| | ||| | || |||| | Sbjct 393588 ACATTGACGCG-GCGCTGGAGACCTACAATCTCATGTCGCTCAAACTTTTCACGCATG-C 393645 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 || || || || ||||| || || || ||| ||| || | || || || ||||| | Sbjct 393646 TACGCCTACACTTTTCAATGCCGGCACACCGCGGCCCCAACTCTCCTCCTGCTTCCTCCT 393705 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||||||||| ||| || | ||||| ||||||| | || || |||| Sbjct 393706 GACCATGAAGGAGGACTCCATCGACGGCATCTACGACACCCTCAAGCAATGCGCTGCCAT 393765 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 || |||| ||||| || || || | ||||| || | || || | | ||||| Sbjct 393766 TTCCAAATTTGCGGGTGGGATTGGCGTATCCATCCACAACATTCGGGCGCGAGACTCCTA 393825 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| || || | || ||||||||||||||| |||| ||||||||||| || |||||| | Sbjct 393826 CATTCGTGGATCGAACGGCACCTCCAACGGCATCGTACCTATGCTCCGCGTTTTCAACGA 393885 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 |||| |||||||| |||||||| || || | | | |||||||| ||||| |||| || Sbjct 393886 TACGGCCCGCTACGTCGACCAGGGCGGAGGCAAGCGCAAGGGTTCCTTCGCCATCTACCT 393945 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||||||||| || ||| | | ||| | |||||||| ||||||||||||||||| Sbjct 393946 AGAGCCCTGGCATGCAGACATCTTTGAATTCCTGGACCTGCGTAAGAACCACGGCAACGA 394005 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 ||||| | || | || || |||||||| |||||| ||| ||||| || ||| || Sbjct 394006 GTTGGAGCGTGCACGTGATCTGTTCTACGCCCTCTGGACGCCCGACCTGTTCATGCGGCG 394065 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| |||| || | |||| |||||||| ||||| || || || || ||| | || Sbjct 394066 CGTGGAGAGCGACGGGGACTGGTCCCTTTTTTGCCCCAACGAGTGCCCGGGCCTGGCGGA 394125 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 ||| || || | ||| | | | || || | ||||| | || || || | Sbjct 394126 CGTGTGCGGCGAGGAGTTTAACCAGCTCTACGCCAGCTACGAGAAGAGTGGGAAAGCACG 394185 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 |||||||| | || | |||| ||| ||| ||||| ||||||||||| || Sbjct 394186 CAAGGTTATTAAGGCCCAGCAGCTCTGGTTCGCGATTCTGGACTCCCAGGTGGAGACAGG 394245 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||||| ||||| ||||||||||| | |||| || || ||||||||| || | || Sbjct 394246 CACGCCTTACATGCTGTTCAAGGACGCCTGCAACCTGAAATCAAACCAGCAGAACTTGGG 394305 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||||| || ||||||||||| ||||| ||||||| || || || || ||| | Sbjct 394306 CACCATCAAATCATCCAATCTGTGCACGGAGATCATCGAGTACACGTCGCCCGATGAGGT 394365 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGC---GAGATGCCT---- 94666 || || || ||||||| |||| | ||||| ||| | ||| | | | || | || Sbjct 394366 CGCGGTCTGCAACCTGGCCTCCGTGAACCTTTCCGCATTCATCCAAGGGGAGGGCTCCGG 394425 Query 94667 --ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGG 94723 | | || | | | ||| ||| || ||| | |||| | | ||||| ||| Sbjct 394426 TAGCGGGAAGACGCCCACTTACGACCTGCAGCGGCTGTATGAAAT---CACGAAGG-TGG 394481 Query 94724 T--CTTG-AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 | | | ||||||||| | || || |||| |||| |||||| ||| ||| || | Sbjct 394482 TGACACGAAACCTGAACCGCGTCATAGACATCAACTACTACCCTGTCGAGGAAGCCAGGC 394541 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 ||| ||| || || || |||||||| |||||||| |||||||| |||||||| | Sbjct 394542 GCTCGAACATGCGACACCGCCCCATCGGGATCGGCGTGCAGGGTTTGGCGGACGCCTTCA 394601 Query 94841 TGATGATGCGTCTGCCCTACGA--CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATT 94898 | | |||||| | || | ||| ||| | | | | || | || || | |||| || Sbjct 394602 TCAAGATGCGATTCCCATTCGAGTCTCCGGAGGCCCAGCAGCTT--AACAAGGACATTTT 394659 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG----GACG 94954 ||| | ||| || | |||||| | | |||| | ||| |||||| || | Sbjct 394660 CGAGACCATGTACTTCGGGGCGGT----AGAGGCGTCGA--TGG--AGATCGCGATGAAG 394711 Query 94955 GCGGG-CCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGAC 95013 | ||| || |||| | ||| ||| || ||| || ||||| | || || |||||| Sbjct 394712 GAGGGTCCCTACGAGACCTTCGCCGGCTCCCCCATGAGCAAGGGCGTCTTCCAATTCGAC 394771 Query 95014 CTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATC 95073 | ||||| |||| ||||| || | ||||||| | | ||||| | || Sbjct 394772 ATGTGGGGCGTGACCCCCTCAACTCGCTGGGACTGGGCCGGTTTACGCTTCAAAGTGCAG 394831 Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 | |||||||| ||| | || | | || |||||||| || || || || |||||| Sbjct 394832 GAGCACGGTGTCCGCAACTCACTATTGCTCGCACCCATGCCTACCGCATCTACTGCGCAG 394891 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||||| |||||||||||||| | || || ||||| || ||| ||||| | | || ||| Sbjct 394892 ATCCTGGGCAACAACGAGTCTGTTGAGCCTTTCACATCGAACATGTACTCCCGTCGCGTG 394951 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA-CGTCTCTGGG 95252 | || || |||||| | || | |||||| |||| || || ||||| | || | | || Sbjct 394952 TTGGCGGGCGAATTCACGGTGGTGAACAAGTACCTGCTCCGCGACCTCATCGAC-CAAGG 395010 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 ||||| | | ||| || ||| | | || || ||||| |||||||| | Sbjct 395011 CCTGTGGACTTCTGAAGTCCGAAATCAAATTATGGGCAACAGGGGCTCAGTCCAGAATGT 395070 Query 95313 --CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC-- 95368 || || || || ||| |||||| || |||||||| ||||||||||||| || Sbjct 395071 GGCCAGC--ATCCCTCGGGAGCTCAAGGACCTGTACAAGACAGTGTGGGAGATCCGGCAG 395128 Query 95369 -AGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNN 95427 || |||||| ||||||| || |||| |||||| ||| |||||| ||| Sbjct 395129 AAGTGCGTGA---TCGACCAGGCCGCCGACCGCGGCGCCTACATCTGTCAGTCGCAGTCT 395185 Query 95428 NNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGG 95487 ||||| | || | | | | | | || |||||| ||||| Sbjct 395186 CTCAATATCCATTTGGCCAATCCGACGCCTGCACAGCTCACCTCCATGCACTTCTATTCC 395245 Query 95488 TGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCC 95547 |||| ||||| ||||||||||| ||||| || | || ||| |||| |||||||| || Sbjct 395246 TGGAAGAAGGGGCTCAAGACCGGCATGTACTACCTACGGACCCGGCCCAAGGCGGATGCC 395305 Query 95548 ATACAGTTC 95556 ||||||||| Sbjct 395306 ATACAGTTC 395314 >seq29 Length=316797 Score = 217 bits (240), Expect = 1e-51 Identities = 603/915 (66%), Gaps = 10/915 (1%) Strand=Plus/Minus Query 93721 GATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTT 93780 || || || | ||||||||| |||| | ||| | || ||||| | ||| ||| Sbjct 131690 GACTATTTCGGCTTCAAAACCATGGAACGAGCCTACTTGCTGAAGATCGGGCGCAAGGTG 131631 Query 93781 TCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG 93840 ||||| ||||| | |||| ||||||| ||| | || || || || | || || Sbjct 131630 GTGGAGCGCCCGCAGTACATGCTTCTGCGCGTTGCCCTTGGTATCCATGGAGAGGATCTG 131571 Query 93841 CCGAATGTTTTGCGGGCTTTCAGAGA-CATGCGGGACAAGAGGTATACCATGGCCACCCC 93899 || | ||| | | | | ||| |||| | ||||| ||| | | ||| |||| Sbjct 131570 CCCGCCGCCTTGGAGACCTAC-GAGCTCATGAGCAACAAGTGGTTCATCCACGCCTCCCC 131512 Query 93900 GACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAA 93959 || || ||| ||||||| || | | || |||||||| ||||| ||||| || | | Sbjct 131511 TACTCTTTTCCACGCGGGCACGCGTTTCCCGCAGATGTCCTCGTGCTTCCTCCTGGCCAT 131452 Query 93960 CAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA- 94018 | || ||||| ||| || || | ||||| || ||| | ||||| || | || Sbjct 131451 GCAAGCGGACTCGATCGTTGGTATCTACGACACGCTGAAGCA--GTGCG-CCGTGATAAG 131395 Query 94019 -AATACG-CGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || || ||||||||||||| || |||||| || | || || || ||||||| Sbjct 131394 CAAGGCGGCGGGGGGAATCGGCCTCTCGGTCCACAACATCCGCGCGCACGGCGCCTACAT 131335 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 || || || || || |||||| || || || |||||| |||||||| || | | Sbjct 131334 TAAGGGCACGAAGGGGACGAGCAACGGTCTGGTGCCCATGCTCAGGGTCTTCGACGTCAC 131275 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGA-AGGGTTCTTTCGCGGTCTATCTCG 94195 ||||||||||||||||||||| || || | |||| |||| |||| || |||| || | Sbjct 131274 GGCGCGCTACGTGGACCAGGGGGGAGGCAAGAGGCCAGGGGCCTTT-GCCATCTACCTGG 131216 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||| |||||||||||| | | | | |||||||| ||||||||||| || || Sbjct 131215 AGCCGTGGCACGCGGACATCTTTGAAGTGCTGGACCTGCGGAAGAACCACGGAAAGGAGG 131156 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 || | |||| | || |||||||| | || ||| | || ||||| || ||| | | | Sbjct 131155 AGGCGCGGGCGCGGGATCTCTTCTATGGACTATGGATTCCCGACCTCTTCATGGAGAGGG 131096 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 | ||| | | ||||| || | |||||| || | || ||||| || | ||| Sbjct 131095 TGGAGGAGGATGGGACCTGGTCCCTCATGTGTCCCGATCAGTGCCCCGGTCTCGCGGACT 131036 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGA 94435 || | || ||| | ||| |||||| ||||| | || || Sbjct 131035 GCCACGGCCAGGCCTTCCGGGACCTATATTTAAAATACGAACGAGAGGGCCGAGTCAAGA 130976 Query 94436 AGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTA 94495 || || |||| | | ||||| | ||| ||||| ||| | |||||||| | Sbjct 130975 AGACAGTGCGTGCTCAGGACTTGTGGTTTGCCATCTTGGACTCGCAGATTGAGACGGGCA 130916 Query 94496 CGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGG 94555 |||||||||| ||| ||||||| || |||| ||| |||||| ||| || | || Sbjct 130915 CGCCCTACATGCTGTACAAGGACGCTTGCAACCTGAAGAGCAACCAACAGAACTTGGGCA 130856 Query 94556 TGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTG 94615 |||||| ||||||||||||||||||||| ||| | || || |||| ||| | | Sbjct 130855 CCATCAAGTCCTCGAATCTGTGCACCGAGATCGTCCAATACACGAGCGCGGAAGAGGTGG 130796 Query 94616 CTGTGTGTAACCTGG 94630 | || || ||||||| Sbjct 130795 CGGTCTGCAACCTGG 130781 Score = 111 bits (122), Expect = 2e-19 Identities = 329/505 (65%), Gaps = 8/505 (2%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 || ||||||| ||| ||||||| |||| | ||||| || |||||||| ||| || Sbjct 130607 AATCTGAACAAGGTCATCGACAGGAACCTGTACCCAGTGCCGGAGGCAGAGCGGAGCAAT 130548 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 | || ||| |||||||| ||| | ||||| ||||| | || ||| | | | | | | Sbjct 130547 CGGAGGCACCGGCCCATTGGCTTGGGCGTGCAGGGCCTGGCCGACACCTTCATCAAGCTT 130488 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || || || | ||||||| ||| || | ||| | || || || | ||| Sbjct 130487 CGCCTCCCTTTCGACTCTCCCGAGGCCCGGCAAACGAACCAAGAAATCTTTGAGACCATG 130428 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCA-CTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || | || ||| | ||| | | |||| | ||| | | || || |||| Sbjct 130427 TACTTCGCCGCCTCCGAGGCCTCCATGGAGCTTGCCAAGAAAGAA----GGCCCCTACGA 130372 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 |||| || || || ||| || || | || || |||||||||||||| || | Sbjct 130371 GTCGTACCCGGGGTCTCCCGCCAGTCAAGGGAAGTTGCAATTCGACCTCTGGGGCGTCAC 130312 Query 95028 GCCCTCG---GGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084 ||| || | || ||||||| || | || || || | | ||||| | Sbjct 130311 TCCCCAAAGCGGCCGGTGGGACTGGGCAGGTTTAAAGAAAGAGATTGCCCAGCACGGCCT 130252 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| | |||||| |||| || |||||||| ||||||||||| ||||||||||| | Sbjct 130251 GCGAAATTCCCTGCTTTTGGCGCCTATGCCCACCGCCTCCACGGCCCAGATCCTTGGGTA 130192 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 ||| |||| ||||||||| |||||| ||| ||||| |||| ||| || || || Sbjct 130191 CAATGAGTGCATCGAACCCTACACCTCGAACTTGTACGCACGGCGAGTGAAGGCAGGAGA 130132 Query 95205 ATTCCCCGTCATCAACAAGCACCTC 95229 ||| || ||||| ||||||| Sbjct 130131 GTTCATTGTGGTCAACCCGCACCTC 130107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718970116640