Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq4 125 7e-24 seq6 104 2e-17 seq9 82.4 7e-11 >seq3 Length=1384164 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || ||||| ||||| || | || |||||||| ||||| ||||| || | Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| ||||| ||| | || | |||||||||||||| || Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || || ||||| | | ||||| ||| || | |||||| Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACA 138059 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | || ||||| ||||| || || || || |||||||||| Sbjct 138058 TCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGG 138010 >seq4 Length=1364975 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || ||||||| |||||||||| ||||||||||| ||||| ||||| || | Sbjct 829195 CCGCCACGCAATCGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGAC 829254 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || | || | ||||||||||| || || Sbjct 829255 AACGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGG 829314 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || |||||||| | | |||| ||||| | ||| || Sbjct 829315 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACG 829374 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || ||||| || ||||| Sbjct 829375 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCAT 829421 >seq6 Length=1241202 Score = 104 bits (114), Expect = 2e-17 Identities = 284/426 (67%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 145756 GTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTC 145815 || || || ||||||||||||||||||||| |||| ||| | || ||||| ||| Sbjct 395286 GTCCGTAGGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATG--- 395230 Query 145816 GACATGACC-GAGTA--CGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCA 145872 || ||| | | | | ||| || | ||| | | | ||| ||||| || |||| Sbjct 395229 GAGGTGAGCTGTGCAGGCGTCGGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAG 395170 Query 145873 ATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGC 145931 ||| | || ||| |||||||||||| ||| |||| |||||| || ||||| | Sbjct 395169 ATGTA-GGCGCCGCGGTCGGCGGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACAC 395111 Query 145932 GGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGA-CCCAT 145990 || || | || ||||||| | | | || || | | | ||||| || || ||| | Sbjct 395110 TGTCTTGTACAGGTCCTTGAGCTCCCGAGGGATGCTGGCCACATTCTGGACTGAGCCCCT 395051 Query 145991 TTTCGGCCAATATTTTG-TTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCC 146049 || ||| ||| |||| || || | ||| | ||| | | | ||| | |||| | Sbjct 395050 GTT--GCCCATAATTTGATTTCGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCG 394993 Query 146050 TTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACG 146109 || || |||| ||| |||||| || ||||| || | ||||| | |||| | Sbjct 394992 CGGAGCAGGTACTTGTTCACCACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATG 394933 Query 146110 TTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTA 146169 || ||||| ||||| | ||||||||||| || || |||||||| || | |||||| Sbjct 394932 TTCGATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTA 394873 Query 146170 GGCATG 146175 |||||| Sbjct 394872 GGCATG 394867 >seq9 Length=1164708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || || | || | ||||||||||| || || || |||||||| Sbjct 608020 ATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTT 608079 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | | || | |||||| | ||| || || | || | Sbjct 608080 GTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAGTAAT 608139 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || || ||||| ||||||||| Sbjct 608140 GGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCATGGCT 608179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496734468160