Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq684 758 0.0 >seq684 Length=114989 Score = 758 bits (840), Expect = 0.0 Identities = 745/955 (78%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || |||||||||||||| || ||||| |||||||| |||||||| || | | |||||||| Sbjct 69439 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 69380 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTG 7663 |||| | ||| ||||| ||||| | ||||||||||| | ||||| | || |||||| Sbjct 69379 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 69320 Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 |||||||| ||||| | |||||||||||| ||||||| ||||||||||| |||||||| Sbjct 69319 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 69260 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 || ||||||||||| || || | ||||||||| | | ||| ||||||||||| ||| Sbjct 69259 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 69200 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 ||||||||||| | ||| |||||||| ||||| ||||| ||||||||||| || |||||| Sbjct 69199 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 69140 Query 7844 TCTTGACCGAACTTATAACCATAGTT--CTGGGACTCAGACT-CAGTGGTTTCACGAACC 7900 ||||| || || || ||||| ||||| | | || | | || |||| |||||| | Sbjct 69139 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGT---TTCACGGATT 69083 Query 7901 AGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCA 7960 | | ||| |||||||| ||||| ||||| |||||||| | ||| |||||||| |||||| Sbjct 69082 AAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACACACCA 69023 Query 7961 GCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGC 8020 || || || ||| ||||| |||||||| || |||||||| ||||||||||| || | | Sbjct 69022 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 68963 Query 8021 ATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCG 8080 ||| ||||||| ||||||||||| || | ||||||| | |||||||| |||||| ||| Sbjct 68962 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 68903 Query 8081 AAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAG 8140 | || || | | |||||| ||| ||||||||| |||||||| ||| | ||||| | Sbjct 68902 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 68843 Query 8141 ATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAG 8200 ||||| |||||||| |||| |||||| ||||||||| ||||| |||||||| ||| || Sbjct 68842 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA-AG 68785 Query 8201 ATAC--CGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACT 8258 ||| | | | |||||| || | || |||||| |||||||||||||||| ||||| | Sbjct 68784 CTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATT 68725 Query 8259 CATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAG 8318 | || | ||| || |||||||| | || |||||||| | |||||||||||||||| | Sbjct 68724 CGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTG 68665 Query 8319 GAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCAC 8378 ||| ||| ||||| | ||| |||||||| || || | || || ||||| || ||||||| Sbjct 68664 GAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCAC 68605 Query 8379 GGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAG 8438 |||| || || || || || ||||| || |||| |||||||| |||||| || | | || Sbjct 68604 GGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAG 68545 Query 8439 CAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATT 8493 | | | | ||||| ||||| | |||||||||||||||| || | ||| || Sbjct 68544 CTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTT 68490 Score = 592 bits (656), Expect = 2e-164 Identities = 745/1020 (73%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || ||||| || | ||| || || || || || |||||||| |||||||||||| Sbjct 38924 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 38865 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 || ||| || |||||||| | | | |||||| || |||| ||| || || |||||| Sbjct 38864 TGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTATAG 38805 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || || |||||||| || ||||| | | |||||| || ||||||||||| ||| Sbjct 38804 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCT 38745 Query 6437 CTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGA 6496 || | ||| | ||| | ||| | ||||||| | ||||| | ||| | || ||| Sbjct 38744 CTTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 38685 Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||| | ||| |||||||| |||||||| || || || || | |||||| || ||| Sbjct 38684 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGA 38625 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 |||||||| | || || || ||||| ||||| || || ||| |||||| || || Sbjct 38624 GACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAA 38565 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCG 6676 || ||| ||||| | ||||||||||| || || || || ||||||||||| || Sbjct 38564 GCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGTTTTCTACAGTAGCTCCA 38505 Query 6677 TGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGG 6736 ||||| ||| | | | ||| |||||||| || ||||||||||||||||| || || || Sbjct 38504 TGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACACCCATCATGTGGAATGGA 38445 Query 6737 TTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACA 6796 || || |||||||| ||||| || |||| ||| | || ||| ||||| || |||||||| Sbjct 38444 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATCGGAAAATAGCTGCAACT 38385 Query 6797 CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGAC 6856 ||||| || |||||||||||||| | ||||| | |||||| || | || ||||| Sbjct 38384 CCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGATAGATTAAGAATACAGAA 38325 Query 6857 ACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA 6916 || || || || || || || ||||| || |||||||| || ||||||||||| || ||| Sbjct 38324 ACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACGGACGAATACCTACAAGA 38265 Query 6917 CGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 || || || ||||| || || || || ||| || || | |||| || || || | || Sbjct 38264 CGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAATCCAAATGCCCCATGTAATGC 38206 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 ||||||| ||||| ||| || | ||| ||||| || |||||||| || || ||||| Sbjct 38205 GACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAATCTCCTTGTGCCTCTGG 38146 Query 7036 ACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 ||||||| | | | ||||| || | | | ||||| ||||||||||| |||| Sbjct 38145 TCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTGTTGATACAGCTACAGT 38086 Query 7096 AAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGAC 7155 | ||| || |||||||| | || |||||||| | || || |||||||| || || Sbjct 38085 TAAGAAGTTGCATCCCTCTAAGTAAGAAGAAGCTAATCCATGTGTGTACCAAGATGTAAC 38026 Query 7156 GAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAG 7215 ||||| || || || | ||| || || | ||| || | || || || || | | ||| Sbjct 38025 AAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGAAATAATAAAAG 37966 Query 7216 ACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||||||||||| ||| ||||| | ||| || || | ||||||||||| || ||||| Sbjct 37965 ACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAAA 37906 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 56005 GGATTTGAACCAACGTAGGCTGAGCCAGCGGATTTACAGTCCGCCCCCTTTAACCACTCG 56064 Query 176193 GACACCTACCCTA 176205 | || | |||||| Sbjct 56065 GGCATCGACCCTA 56077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622119480832960