Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 187 3e-42 seq29 161 1e-34 seq1 138 1e-27 seq4 104 3e-17 seq13 84.2 3e-11 >seq6 Length=1241202 Score = 187 bits (206), Expect = 3e-42 Identities = 588/902 (65%), Gaps = 23/902 (3%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || || ||||| |||| ||| || || |||||||||||||||| || Sbjct 394350 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 394291 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 ||||| || ||| || || |||||| | ||||| || ||||| || |||||| ||| Sbjct 394290 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 394231 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCAC--AGTGGCGTTG---GCTCGCC 116647 || | ||||| || ||| | || ||||| | | | | ||| ||| || Sbjct 394230 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 394176 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC-CACAGCCTCTGAGAGC 116706 | || |||||| | | |||||| | |||||| || || |||| | || | || Sbjct 394175 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACA-CGTCCGCCAGG 394117 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | || || || || ||||| | || | ||| || ||| |||| Sbjct 394116 CCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATG 394057 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCC 116824 || ||||| || ||||||| || |||| ||||| || || ||| | || | | Sbjct 394056 AACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGT--GCACGCTCCAACTCGTTGC 393999 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | || || ||||| |||| || || | ||| || || ||||| || || ||||| | Sbjct 393998 CGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGA 393939 Query 116885 CCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941 |||| || |||||||| | || |||||| || || | ||||| |||| | Sbjct 393938 TGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGA 393879 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGA 116999 | ||||| ||||| || | ||| || | || ||| || | || ||||| | ||| Sbjct 393878 AAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGT 393819 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 || | || | | | ||||||| | ||||| || || || | || || || Sbjct 393818 CTCGC--GCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGC 393761 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 ||||| | | |||| || ||||||| || ||||| ||||| |||| | | | ||| Sbjct 393760 AGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAG 393701 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 ||||||| || | ||| |||| ||||| || || ||||| || || || || || || Sbjct 393700 GAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATG 393641 Query 117180 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239 |||| | | ||||| || ||||||||||| | | | ||||| || Sbjct 393640 CGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTT 393581 Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 117299 ||| ||||| |||| || ||||| | ||||| ||||| ||||| | | || | Sbjct 393580 GTGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTT 393521 Query 117300 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | | | | ||||| ||| |||| || || | ||||| ||| || | ||| |||| Sbjct 393520 CATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 393461 Query 117360 CC 117361 || Sbjct 393460 CC 393459 >seq29 Length=316797 Score = 161 bits (178), Expect = 1e-34 Identities = 584/899 (65%), Gaps = 20/899 (2%) Strand=Plus/Plus Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || |||| ||| || ||| |||||||||||||||| ||| || ||| | Sbjct 130825 ATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGG 130884 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || || |||||||| ||||| || ||||| |||||||| | || || | | || Sbjct 130885 TTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATG 130944 Query 116605 GCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 116664 || ||| | || || |||| || ||| |||| ||||| ||||| ||| Sbjct 130945 GCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTT 131004 Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAGCCCTGGTGCCTTATCTG 116722 || ||| || || | | || ||| || | ||| || || || ||| | Sbjct 131005 AAATATAGGTCCCGGAAGGCCTGGCCGTGGCAG--TCCGCGAGACCGGGGCACTGATCGG 131062 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 |||| | ||| ||||| ||| ||||||| |||| || |||||||||||| || |||| Sbjct 131063 GACACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCC 131122 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | || | ||||||||||||| || || || || | || || || |||| | Sbjct 131123 ATAGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGT 131182 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 ||| | || | ||| |||||||||||||| |||||||| | || | | ||||| || Sbjct 131183 CCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGC-AAAGGCCCCTGGC 131241 Query 116903 ----GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 | || |||||| || || | |||||| ||| || || | ||||| || Sbjct 131242 CTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGC 131301 Query 116959 ATGATACCATCAGATTG-GCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACA 117015 | | ||| | | | | || || || ||| || || | | | || || | || Sbjct 131302 ACCAGACCGT-TGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCC--GTGCGCGCGGATG 131358 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 | ||||| | || || ||||| ||| ||| || ||||||| | | || Sbjct 131359 TTGTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGC 131418 Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATT 117135 || ||||||| ||| |||||||||| | | | || | ||||||||| ||||| Sbjct 131419 GTGTCGTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATC 131478 Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 117194 || || | || || |||| ||| || || || | |||||||||||| || | | Sbjct 131479 TGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTT 131537 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 | ||| ||||||||||||||| | | ||| | || || || || ||||| | | Sbjct 131538 GCTCATGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGC 131597 Query 117255 GACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTA 117314 || |||| || |||||| || || |||| || | | ||| | || | | ||| Sbjct 131598 AACGCGCAGAAGCATGTACTGCGGGCGCTCCACCACCTTGCGCCCGATCTTCAGCAAGTA 131657 Query 117315 -ACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCTCTTCGTGACG 117372 ||| | |||| ||| |||| || |||||| ||||| ||| || | | ||||| || Sbjct 131658 GGCTCGT-TCCATGGTTTTGAAGCCGAAATAGTCAAAGAAATAATCGCGC-TCGTGTCG 131714 >seq1 Length=1546440 Score = 138 bits (152), Expect = 1e-27 Identities = 258/375 (69%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 12701 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 12760 |||||| ||||| || |||||||| | ||| | ||| | || || || || || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 12761 CGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 |||||||| | ||| || | | | |||||||| |||||||| |||| || || || Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCG--GGCATACCACCCGCACTGCGTTGCTTACCG 12878 | ||| || || || || || ||| | |||| | | |||| | ||| || || Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGC--CCGCCCCGCGCTGACGGCCC 801254 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAACTTC 12934 ||||| ||||| ||||| || |||| ||| || || || | ||| | | ||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 801310 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT---TGGC 12991 || ||||| ||||| | | |||||| || |||||||||||||| ||||| | | | Sbjct 801311 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 801370 Query 12992 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 13051 ||||| | ||||||||| ||| || || ||||||| |||| || || || || Sbjct 801371 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 801427 Query 13052 CTTCCCCGTCCCTGG 13066 ||| |||||||| || Sbjct 801428 CTTACCCGTCCCGGG 801442 >seq4 Length=1364975 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || ||||||||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| || || || | | ||||||||||| || | |||| || || Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGACGCGTACTTGCGGTCGCAC 237725 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG 127759 ||| | |||||| | ||||| || ||| |||||||||| || || | ||| Sbjct 237724 CACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAAG 237665 Query 127760 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 || | | || || ||||| | |||||||| Sbjct 237664 AGCTTGTGTTTCTCGGATGGGTTCTTGATGTA 237633 >seq13 Length=890907 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 ||| || || || ||||||| ||||| || || || || | || | |||| | || Sbjct 595741 CGCGTCCTTCCCCCCCATGATCCGCGTGCCGAACTGCCCGCTCGGGTAGAGGAAACCAAT 595682 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTC 176043 ||||| ||||||| | | | |||| || ||||| | | |||| | || Sbjct 595681 GTTGTTGGAGCCCACGAAATTTTGGGCCATGCCCACGATCGTCCCGTTCAAGGAGGCCTC 595622 Query 176044 ACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTC 176103 ||||||||||||||||| | || | || || | |||| ||| || ||||| ||||| Sbjct 595621 GCCGTGATGGTAGGCCGAGTGCTCGGAGACGTAGCCAGCCAGCTGGGCGACCTTAATCTC 595562 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | |||||||||| | ||||| ||| | | || || | ||| | ||||| || || Sbjct 595561 TTTCTTGAGGTTCCGTTTAAAGCAGGCAAAGAGAACTTTCCGCTGGGCCGGCTTCAGCCC 595502 Query 176164 GTCGGCCATGTGTGCGATGGAACGCT 176189 || || ||| | |||||| |||| Sbjct 595501 ATCCATCAGGTGGGGGATGGAGCGCT 595476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501954513440