Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq29 188 1e-42 seq6 118 2e-21 >seq29 Length=316797 Score = 188 bits (208), Expect = 1e-42 Identities = 490/743 (66%), Gaps = 8/743 (1%) Strand=Plus/Plus Query 204887 ACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTG 204946 |||||||||||||||| || | |||| | |||| | ||| ||||| ||| Sbjct 130822 ACGATCTCGGTGCACAGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTC 130881 Query 204947 CGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGA 205006 |||| || | ||||||||||| |||| | ||| | || |||| ||||| || || Sbjct 130882 AGGTTGCAAGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAG 130941 Query 205007 ATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTA-CATCCCTTGAGACTCGTA 205065 ||| |||||| || |||| |||| |||| | | |||| | ||||| Sbjct 130942 ATGGCAAACCACAAGTCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGT-TCGTA 131000 Query 205066 TTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTT 205125 |||| || || || ||| | |||| |||| || || || || | | Sbjct 131001 TTTTAAATATAGGTCCCGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATC 131060 Query 205126 GGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGAT 205185 ||||||||| || ||||| || ||| || | |||||||||||| || |||||| || Sbjct 131061 GGGACACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAAT 131120 Query 205186 CCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAA 205245 ||| || || || || ||||| || |||| | || | ||| ||||||| || Sbjct 131121 CCATAGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAG 131180 Query 205246 GTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGG 205305 ||||||| | ||||| |||||||||||||| | | | ||| | || ||||| Sbjct 131181 GTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGG 131240 Query 205306 CCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGG 205365 ||||||| || ||||||||||| ||| | | | ||| ||| || | ||||| || Sbjct 131241 CCTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGG 131300 Query 205366 CACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTT 205425 ||||||||||||| ||||| ||||||| || ||| | ||| | || | | ||| Sbjct 131301 CACCAGACCGTTGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTT 131360 Query 205426 GGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGT 205485 | || | ||| || || || | |||| ||| |||||||| | ||| || Sbjct 131361 GTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGT 131420 Query 205486 GCTGTAGATGCCTGCGATGGAATCGTCCGC---CAGTGTCACCAGATAGCACGAAGCCAG 205542 | |||||| || |||| || |||||| || | || || ||||||| | || Sbjct 131421 GTCGTAGATACCAACGATCGA---GTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACAT 131477 Query 205543 CTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 || | || |||||||||||||| || || ||| ||||||| |||| | ||| | Sbjct 131478 CTGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTT 131537 Query 205603 GCTCAAACACCTGTAGGTCTCCA 205625 ||||| | ||||||||||| Sbjct 131538 GCTCATGAGCTCGTAGGTCTCCA 131560 >seq6 Length=1241202 Score = 118 bits (130), Expect = 2e-21 Identities = 384/581 (66%), Gaps = 14/581 (2%) Strand=Plus/Minus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||| |||||||||||||| ||||| | | | |||| | | | || |||||||||| Sbjct 395327 TCTTATCCACCGTGAACTGTATGGCATCCGCCTTGGGCCGGGTCCGTAGGTAGTACATGC 395268 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTG 203956 ||||||| || ||||||| ||| || | ||||||||| | || | ||| || | Sbjct 395267 CGGTCTTGAGCCCCTTCTTCCAGGAATAGAAGTGCATGGAGGTGAGCTGTGCAGGCG-TC 395209 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || | ||||| || || || |||||||| || |||| ||||||| || || || Sbjct 395208 GGATTGGCCAAATGGATATTGAGAGACTGCGACTGACAGATG-TAGGCGCCGCGGTCGGC 395150 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 |||| | ||| | | ||||||| ||||||||||| |||||| ||| ||| || Sbjct 395149 GGCCTGGTCGATCACGCACTTCTGCCGGATCTCCCACACTGTCTTGTACAGGTCCTTGAG 395090 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | |||| | || |||| | || || ||||| ||| | |||| | | | || Sbjct 395089 CTCCCGAGGGA-TGCTGGCCACATTCTGGACTGAGCCCCTGTTGCCCAT-AATTTGATTT 395032 Query 204135 TCGTC-TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 | | || ||||| ||| ||| || || || | ||||| ||| | Sbjct 395031 CGGACTTCAGAAGTCCACAGGCCTTGGTCGATGAGGTCGCGGAGCAGGTACTTGTTCACC 394972 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | | || || || | || ||| | |||| | ||| ||| ||||| || || | Sbjct 394971 ACCGTGAATTCGCCCGCCAACACGCGACGGGAGTACATGTTCGATGTGAAAGGCTCAACA 394912 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | |||||||||||| | ||||| || || || || |||||||| || || | || Sbjct 394911 GACTCGTTGTTGCCCAGGATCTGCGCAGTAGATGCGGTAGGCATGGGTGCGAGCAATAGT 394852 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTG-CGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||| ||||||| | || || || || | | | || |||||| || || Sbjct 394851 GAGTTGCGGACACCGTGCTCCTGCACTTTGAAGCGT-AAACCGGCCCAGTC--CCAGCGA 394795 Query 204373 ACT--GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 | ||| ||||||||||||||||||| || |||| ||| Sbjct 394794 GTTGAGGGGGTCACGCCCCACATGTCGAATTGGAAGACGCC 394754 Score = 109 bits (120), Expect = 9e-19 Identities = 400/621 (64%), Gaps = 14/621 (2%) Strand=Plus/Minus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | ||||||||| || || |||| |||| ||||||| ||| |||| | ||| | Sbjct 394305 CCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTG 394246 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTG 205038 || |||||| ||| || |||||| | ||| | | | |||| | |||| Sbjct 394245 CCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAGCTGCTGGGCCTTAATAACCTTG 394186 Query 205039 CTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA 205098 | | | | | ||| |||||| | | ||| ||| ||| || ||| | Sbjct 394185 CGTGCTTTCCCACTCTT----CTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCA 394130 Query 205099 CACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTT 205158 ||||||| ||| || || || | ||||| || | || ||||| | ||| | Sbjct 394129 CACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTC 394070 Query 205159 CACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAAT 205218 ||| | | ||| ||||||||| |||| ||| |||| ||||||||||| || | Sbjct 394069 CACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCAC--GC 394012 Query 205219 TCC--GTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCAC 205276 ||| |||| || ||||||| || |||||| | | ||||| || ||||| Sbjct 394011 TCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAG 393952 Query 205277 GGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGA 205336 ||||||| | | ||| | | || | |||| || |||||||| || ||| Sbjct 393951 GGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGG 393892 Query 205337 GTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTG 205396 | | | |||||||||| || ||||| || || | ||||||| ||| ||||||| | Sbjct 393891 GCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCA 393832 Query 205397 TTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACAC 205456 ||| ||| || |||| | |||| ||||| |||||||||| || | | | Sbjct 393831 CGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAAT 393772 Query 205457 TTGGCGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGC 205515 |||| || ||||| | |||| || ||| ||||||||| ||||||| || ||| Sbjct 393771 TTGGAAATGGCAGCGCATTGCTTG-AGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTT 393713 Query 205516 CAGTGTCACCAGATAGCACGA 205536 || |||| || |||| || Sbjct 393712 CATGGTCAGGAGGAAGCAGGA 393692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795148401423040