Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 4e-12 >seq3 Length=1384164 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| |||| ||||| ||||| || ||||| || || || || || | | Sbjct 138238 CCACCACGCAAGCGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 138179 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| | || |||| || || || | ||||||| ||||||||||| | ||| Sbjct 138178 AGCGTGCGTCCGTCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGA 138119 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||| || ||||| || ||||| || || ||| | | | ||| || || | Sbjct 138118 ATGCCCTCCTTGTCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGC--TCGA 138061 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||| || || || || ||||| | || || ||||||||||||||| Sbjct 138060 CATCCAATGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 138011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347366704240172