Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq3 131 2e-25 >seq4 Length=1364975 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || ||||| |||||||| |||||||| ||||||| ||| ||| Sbjct 829421 ATGCAAATCTTTGTTAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCCAGT 829362 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| ||||| || ||| | || || Sbjct 829361 GACACGATCGAGAATGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 829302 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||||| || |||||||| |||| |||||| | ||||||||| Sbjct 829301 CAGCGCCTCATTTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGTTGTCTGACTACAAC 829242 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || | || || |||||||| ||||| ||| | ||||| Sbjct 829241 ATTCAGAAAGAGTCTACCCTACATTTGGTCCTGCGATTGCGTGGCGG 829195 Score = 91.5 bits (100), Expect = 1e-13 Identities = 194/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 132958 GGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACG 133017 ||||| ||||| || || || | ||| || || | | ||| ||| || || |||| | Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATC 133077 ||||| ||||| || || || | || ||||||| | || | || | |||| | || | Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGACGCGTACTTGCGGTCGCAC 237725 Query 133078 CAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || || |||||||| ||||| | ||| || || | || || |||||||| || Sbjct 237724 CACCGGAGCGCCCAACGCGCCTTGCGTCGGACACAAGGGACGGTCTCAATGGCGTTTAAG 237665 Query 133138 AAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197 | | ||||||| | | | ||| ||||| || ||| ||||||| || Sbjct 237664 AGCTTGTGTTTCTCGGATGGGTTCTTGATGTAAGTGTCAATAAGGAGGGAATACACCTCA 237605 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 ||| | || || ||||||||||| || ||||| ||||| || ||||| Sbjct 237604 CTGTGAATATTTTCGATGGCGATTTGGAAACCGTAGAAGCATCGAGCCTC 237555 >seq3 Length=1384164 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| |||||||| | || |||||| ||| | Sbjct 138012 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACATTGGATGTCGAGCCCAGC 138071 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || |||| || | ||||| ||||| |||||| |||| || Sbjct 138072 GATACCATCGAAAATGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAG 138131 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 138132 CAGCGCCTAATTTTCGCAGGAAAGCAGCTGGAAGACGGACGCACGCTGTCTGACTACAAC 138191 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || | || |||| ||||| |||| ||| | || || Sbjct 138192 ATTCAGAAAGAGTCAACCTTGCACTTGGTCTTGCGCTTGCGTGGTGG 138238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168523522560