Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq684 140 1e-27 >seq684 Length=114989 Score = 140 bits (154), Expect = 1e-27 Identities = 207/295 (70%), Gaps = 15/295 (5%) Strand=Plus/Plus Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 |||| || | || || |||||||| || || ||||| ||||| | ||| | ||||||| Sbjct 35326 CAGTAACAAAAGCTGTTATTACTGTCCCTGCATATTTTAATGACTCTCAAAGACAAGCAA 35385 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 | ||||| ||||| | ||||| || ||| | || || || ||||| |||||||| |||| Sbjct 35386 CAAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTATAAATGAACCAACAG 35445 Query 451431 CAGCTGCTCTAGCATATGGACTAGG---AAAATCAAAAGAAACAGAAGaaaaaaaTATTT 451487 | || ||||| || ||||| ||| ||||||||| |||||| |||| Sbjct 35446 CCGCAGCTCTTGCTTATGGGTTAGACAAAAAATCAAATGAAACA------------ATTT 35493 Query 451488 TAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGG 451547 || | |||||||| ||||| || || ||| |||| | | | ||| ||||| | Sbjct 35494 TAATTTTTGATTTAGGTGGTGGTACATTTGACGTTTCTATTTTAGAAGTTGGGGATGGTG 35553 Query 451548 TATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||||||||||| ||||| || |||| || |||| ||||| ||| |||| Sbjct 35554 TATTTGAAGTATTAGCAACGGCAGGAGATAGCCACTTAGGTGGTGATGATTTTGA 35608 Score = 91.5 bits (100), Expect = 6e-13 Identities = 371/577 (64%), Gaps = 27/577 (5%) Strand=Plus/Plus Query 451786 TACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGT---AAT 451842 ||||||||| |||||||||||| || |||| | || ||| | || | | ||| Sbjct 35816 TACTCTTACACGTGCTAAATTT-AACGAATTATGTGGAGGATTAATTCAACGATGTCAAT 35874 Query 451843 GAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAAT 451902 | || |||| || ||||| || || || | ||| | |||| | ||||| | Sbjct 35875 --ATCCAATTGAAACAGCGTTACAAGACTCAAATTTAAGTCCAAATAATTTAAATGAAGT 35932 Query 451903 TGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATAT-GTTGTCTTCTTA-- 451959 | | | ||||| |||||| |||| || ||| |||||||| | ||| ||| Sbjct 35933 TATTTTAGTAGGCGGTTCTTCACGTATCCCTGCTATTCAAGAATTAGTTCAAAAATTAAC 35992 Query 451960 TTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGC 452019 |||| |||| ||| | | | || ||||||||||||| ||| || ||| || Sbjct 35993 TTTT-----AAAAAGCCTAATTTAACG-GTTAATCCTGATGAAGTTGTAGCTGTTGGAGC 36046 Query 452020 TGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCTGTT 452079 ||| || | | ||| || || | || ||||| ||| |||| || | || Sbjct 36047 TGCGATTAATGGAGC---------AGTTTTGGCTGGTGAAA--TTAA-AGATGTTTTATT 36094 Query 452080 AGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTT 452139 | |||| |||||||| ||||| | |||||||||||| |||||| | ||||||| | Sbjct 36095 ATTAGACGTAACACCATTATCTTTAGGAGTTGAAACAATTGGTGGTTTAATGACTAGAAT 36154 Query 452140 AATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGA 452199 ||| || || || | ||||| | ||| | | |||||||| ||||| || Sbjct 36155 GATTGAAAGAAATACAACAATTCCAGCAACAAAAACTGAAACATTTTCAACAGCCGAAGA 36214 Query 452200 TAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAA 452259 ||||||||| ||| |||||| || | |||| ||||| | | | |||||| Sbjct 36215 CAACCAACCAAAAGTAGATATTCATGTACTACAAGGTGAACGCTTACTTGCTTCAGATAA 36274 Query 452260 TAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCA 452319 || | ||||| | ||| ||| || ||| | || || || ||| || || Sbjct 36275 CAAAAGTTTAGGACATTTTGAACTTGGGAATATTTCAGCTGCCCCTAGAGGAGTACCACA 36334 Query 452320 AATTGAAATTACCTATGATGTTGATGCAAATGGTATT 452356 ||||||| | || | |||| | || ||| |||| ||| Sbjct 36335 AATTGAAGTAACATTTGATATAGACGCAGATGGAATT 36371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975701085297872