Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq684 147 2e-29 >seq684 Length=114989 Score = 147 bits (162), Expect = 2e-29 Identities = 206/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 |||||||| ||||| || || | ||| ||||| ||| ||| ||||| || | ||| Sbjct 35608 TCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGTTGCTAATACTTCAAATACACCA 35549 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || ||| |||| || || ||| || |||||||| | ||||||||| | | | Sbjct 35548 TCCCCAACTTCTAAAATAGAAACGTCAAATGTACCACCACCTAAATCAAAAATTA--AAA 35491 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || || |||| || ||| || | ||||| |||| ||| || || ||||||||| Sbjct 35490 TTGTTTCATTTGATTT----TTTGTCTAACCCATAAGCAAGAGCTGCGGCTGTTGGTTCA 35435 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || ||||| | | || | | || |||||| | ||||| ||||| || ||||||||| Sbjct 35434 TTTATAATACGTAGTACTTCTAATCCTGCAATTTTACCTGCGTCTTTTGTTGCTTGTCTT 35375 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || |||||||||||||| ||||||||||| || | |||||| Sbjct 35374 TGAGAGTCATTAAAATATGCAGGGACAGTAATAACAGCTTTTGTTACT 35327 Score = 122 bits (134), Expect = 7e-22 Identities = 235/347 (68%), Gaps = 15/347 (4%) Strand=Plus/Minus Query 322059 TTAGAATATGATTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTATTACCAC 322118 |||||| || |||||||| |||||||||| || || || || || ||| || Sbjct 35634 TTAGAACATACTTCATTATAGCGGAGTCAAAATCATCACCACCTAAGTGGCTATCTCCTG 35575 Query 322119 CTACTGCTAATGTTCTAAATACTCCATTTGAGATATTCATTAACGAAACATCTAAAGTCC 322178 | ||||||| | |||||| |||| | | | | ||||| || || || | Sbjct 35574 CCGTTGCTAATACTTCAAATACACCATCCCCAACTTCTAAAATAGAAACGTCAAATGTAC 35515 Query 322179 CAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCCATTTTTCACTTC 322238 || | ||||| ||| ||| ||| | || ||| ||| |||||| | Sbjct 35514 CACCACCTAAATCAAAAA--------TTAAAA----TTGTTTCATTTGATTTTT---TGT 35470 Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 |||| || || ||||||||||| || ||||||||||| || || || || ||||| | Sbjct 35469 CTAACCCATAAGCAAGAGCTGCGGCTGTTGGTTCATTTATAATACGTAGTACTTCTAATC 35410 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | ||||||||| | | || ||||||||||| || | ||||||||||||||| || | Sbjct 35409 CTGCAATTTTACCTGCGTCTTTTGTTGCTTGTCTTTGAGAGTCATTAAAATATGCAGGGA 35350 Query 322359 CAGTAATAACTGCTTTATTAATAGGTTTTTGTAAATATTGGCTCGCG 322405 |||||||||| ||||| | | | || | |||| ||| |||||| Sbjct 35349 CAGTAATAACAGCTTTTGTTACTGTTTCATTTAAAAATTTACTCGCG 35303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780788457666904