Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq684 116 5e-21 >seq684 Length=114989 Score = 116 bits (128), Expect = 5e-21 Identities = 328/497 (66%), Gaps = 10/497 (2%) Strand=Plus/Plus Query 11280 ATCAAATCTACCGGGGCGTAATAACGCATCGTCGAGTATATCGATACGGTTTGTTGCACC 11339 |||||| | || || | |||||| || || | ||||| | |||||| |||||| | Sbjct 14827 ATCAAAACGCCCAGGTCTTAATAAAGCTGAATCTAAAATATCTACACGGTTAGTTGCAGC 14886 Query 11340 TATAACAACAATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAAT 11399 || || | | || | | | || |||||||||||||| ||||| | || || | Sbjct 14887 AATTACTATGACCCCATTATTTGTTTCAAAACCATCCATTTCAGTTAAAAGCTGATTTAA 14946 Query 11400 TGTTTGTTCACGCTCATCGTT--TGCCGCAAAC-CCATTCATACTTCTTTTCTTACCAAT 11456 |||||||| ||||||||||| || | ||| ||| || | || | |||||| Sbjct 14947 CGTTTGTTCTCGCTCATCGTTACCACCTCCAACTCCA--GAT-CCCCTCTGTCTACCAAC 15003 Query 11457 CGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGT--GCCAATTCAAAT 11514 ||||| |||||||| ||||| ||||| || || | |||| | | || || ||| Sbjct 15004 TGCATCTATTTCATCAATAAAAATAATGCAAGG--GGTTTTTGCTTTAGCTCTTTTAAAA 15061 Query 11515 ATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGAA 11574 | ||||| | |||| || |||| || || || | ||| || ||| ||| | ||| Sbjct 15062 AGGTCACGAATTCTTGAAGCCCCTATTCCGACGAATAATTCTACAAACTCTGATGCTGAA 15121 Query 11575 CACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTTACCT 11634 || || ||||| || | || || || ||||| |||| | |||||||||| Sbjct 15122 CAACTAAAGAAAGGGACTTTTGCCTCGCCTGCAATAGCTTTAGCTAGTAATGTTTTACCT 15181 Query 11635 GTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCAAAGTAC 11694 || || || |||| |||||| | || | || ||||| ||||| | | ||| Sbjct 15182 GTCCCAGGAGGTCCTGATAATAAAACTCCTTTAGGAATTTTTGCACCAACTCGAGTGTAA 15241 Query 11695 TTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTATCTATA 11754 |||||| || | ||| ||||||||||| || || ||||| | ||| ||| Sbjct 15242 CGTTCTGGTTTTTTTAAAAATGTAACAATTTCTTGGAATTCTTCTTTTACTTCATCAATA 15301 Query 11755 CCCTGAACATCATCAAA 11771 || |||||||||||| Sbjct 15302 CCGGCAACATCATCAAA 15318 Score = 111 bits (122), Expect = 2e-19 Identities = 192/275 (70%), Gaps = 12/275 (4%) Strand=Plus/Minus Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 || || ||||| |||||||| ||||| |||| || || || ||| |||||||| | | Sbjct 35611 GAGTCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGTTGCTAATACTTCAAATACA 35552 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || | ||| | ||| | ||||| ||||| ||||||||||| | |||||||| | Sbjct 35551 CCATCCCCAACTTCTAAAATAGAAACGTCAAATGTACCACCACCTAAATCAAAAAT---T 35495 Query 7574 ACGTTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | | || || |||| || || || | || || || | ||| || || |||| Sbjct 35494 AAAATTGTTTC-----ATTTGATTTTTTGTCTAACCCATAAGCAAGAGCTGCGGCTGTTG 35440 Query 7632 GTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||||| |||||||| || | ||| | || ||||| | | || ||||| || ||| Sbjct 35439 GTTCATTTATAATACGTAG-TACTTCTAATCCTGCAATTTTACCTGCGTCTTTTGTTGCT 35381 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 |||| ||| || || ||||| || || ||||| || Sbjct 35380 TGTCTTTGAGAGTCATTAAAATATGCAGGGACAGT 35346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635127369614560