Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq29 136 5e-27 >seq1 Length=1546440 Score = 140 bits (154), Expect = 4e-28 Identities = 311/460 (68%), Gaps = 20/460 (4%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 |||||| ||||| || ||||| || | || | || | || || | ||||| || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 ||||||||| | || || | | | || || || |||||||| |||| |||||||| Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCT--GGCATACCACCAGCACTGCGTTGCTTTCCC 16061 | || || ||||| || || ||| || |||| | || || | ||| || ||| Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAA--GCCCGCCCCGCGCTGACGGCCC 801254 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTC 16117 |||||||||||||| || || || | |||||||| ||| | ||||| | ||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 801310 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---C 16174 || | ||| || |||||| ||| ||||| || ||||||||||| ||||| | | | Sbjct 801311 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 801370 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 ||||| | ||||||||| || || || ||||| | |||| || || || || Sbjct 801371 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 801427 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTC 16293 ||||||||| || || || | | || | || || || ||||| ||||| || || Sbjct 801428 CTTACCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTC 801487 Query 16294 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | |||| | || || | ||| || || || || | ||| Sbjct 801488 C-GTGTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 801526 >seq29 Length=316797 Score = 136 bits (150), Expect = 5e-27 Identities = 321/479 (67%), Gaps = 7/479 (1%) Strand=Plus/Minus Query 111933 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG--GC--GTCG 111988 || ||||| | || || ||| ||| |||||||| || |||| | || || | | Sbjct 131300 CCCATGCTCAGGGTCTTCGACGTCACGGCGCGCTACGTGGACCAGGGGGGAGGCAAGAGG 131241 Query 111989 CAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGA 112048 | |||| || | || |||| || ||||| ||||||||||| ||| | || | || || Sbjct 131240 CCAGGGGCCTTTGCCA-TCTACCTGGAGCCGTGGCACGCGGACATCTTTGAAGTGCTGGA 131182 Query 112049 GTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTG 112108 |||| ||||| || | |||||||||||| || |||||||||| | || || Sbjct 131181 CCTGCGGAAGAACCACGGAAAGGAGGAGGCGCGGGCGCGGGATCTCTTCTATGGACTATG 131122 Query 112109 GATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC 112168 |||||| || ||||||||| |||| || |||||| ||| | ||||| ||| | ||||| Sbjct 131121 GATTCCCGACCTCTTCATGGAGAGGGTGGAGGAGGATGGGACCTGGTCCCTCATGTGTCC 131062 Query 112169 AGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 112227 || || ||||||||| | || |||| || ||| || | ||| || || Sbjct 131061 CGATCAGTGCCCCGGTCTCGCGGACTGCC-ACGGCCAGGCCTTCCGGGACCTATATTTAA 131003 Query 112228 AGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTA 112287 | ||||| ||| | || | | ||| |||| ||| || ||||| || | Sbjct 131002 AATACGAACGAGAGGGCCGAGTCAAGAAGACAGTGCGTGCTCAGGACTTGTGGTTTGCCA 130943 Query 112288 TTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACC 112347 | | | || || | ||||| || || || || ||||| ||||| ||||| || |||| Sbjct 130942 TCTTGGACTCGCAGATTGAGACGGGCACGCCCTACATGCTGTACAAGGACGCTTGCAACC 130883 Query 112348 AAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 ||||| || ||| |||| ||||| |||||| || || || || || || ||| Sbjct 130882 TGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTCCTCGAATCTGTGCACCGAGATC 130824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737092652480