Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 145 9e-30 seq29 138 1e-27 seq1 120 4e-22 seq684 84.2 3e-11 >seq6 Length=1241202 Score = 145 bits (160), Expect = 9e-30 Identities = 525/813 (65%), Gaps = 29/813 (4%) Strand=Plus/Minus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 ||||| || | || ||||| |||| ||||| || ||| |||||||||| ||| Sbjct 394350 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 394291 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || ||||| |||||| || ||||| | |||||||| || || || || ||| ||| Sbjct 394290 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 394231 Query 110449 GACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGAC--AGTTGCGTTAGCGAGACCTT 110506 || | ||||| || ||| | || || ||| | | | | || ||| | | || Sbjct 394230 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTT-GCGTG-CTTT 394178 Query 110507 CC-----TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 || | |||||| ||| ||| | | | ||| |||| ||| |||| || | || Sbjct 394177 CCCACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAG 394118 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 ||| || || ||| || || |||||||| | || | ||| || | | ||| Sbjct 394117 GCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCAT 394058 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||||||||| || |||| | || |||| || ||||| ||| || || | || Sbjct 394057 GAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACTCGTTGCC 393998 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| || || |||| || || | ||| || | ||||| || || || |||| Sbjct 393997 GTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGAT 393938 Query 110742 AGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAA 110798 |||| ||| ||||| || | || |||||| || ||||| || || | ||||| Sbjct 393937 GGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAA 393878 Query 110799 GACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTT 110858 || | ||||||||| | || || | ||| || || | || | ||| ||| | Sbjct 393877 AACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAGTC 393818 Query 110859 ATTGGCACGAATGTCGTGGATATGCATA--CCAATACCACCCGCCCACTTACTAATTTGT 110916 || ||||||| |||| ||| ||| ||||| |||||||| | || ||| Sbjct 393817 TCGCGCCCGAATGTTGTGG--ATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCA 393760 Query 110917 GCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGA 110976 || || | |||| || | || || || || || || || |||| ||| | || Sbjct 393759 GCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGG 393700 Query 110977 AAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 ||||| || || | || || || || || || |||||||| |||||||| || ||||| Sbjct 393699 AAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGC 393640 Query 111037 ATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG----AGGGTACATCTTT 111092 |||| || | ||||| ||||| || || || || | | || | ||||| Sbjct 393639 GTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTC-TCTTT 393581 Query 111093 ACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 ||| |||||||| || || ||||||| ||| Sbjct 393580 ---GTGGATACCAATTGCCACACGCATGATCAT 393551 >seq29 Length=316797 Score = 138 bits (152), Expect = 1e-27 Identities = 371/564 (66%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634 |||||||| | ||||||||| | ||| ||||||| ||||||| |||||| ||||| ||| Sbjct 131059 TCGGGACACATGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGA 131118 Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694 ||||| | | |||| || || || || ||||| || | || ||||| || Sbjct 131119 ATCCATAGTCCATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGC 131178 Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC- 110753 || |||| | || | ||| |||| |||||| || || || |||| || | || || Sbjct 131179 AGGTCCAGCACTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCT 131238 Query 110754 --CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATA 110811 | | | ||| |||||| || ||||| || ||| | | ||||||||||||||| Sbjct 131239 GGCCTCTTGCCTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATG 131298 Query 110812 GGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATG 110871 || | | || | | || || || ||| |||| || | || || ||| Sbjct 131299 GGCACCAGACCGTTGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATG 131358 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGT 110931 | ||||| | || || || |||||| ||| || || || |||| | || Sbjct 131359 TTGTGGACCGAGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGC 131418 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 || | || |||||| | ||||| || || | |||| | || ||||| || |||||| Sbjct 131419 GTGTCGTAGATACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATC 131478 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TG 111050 || || | |||| ||||| | ||| || ||||| | || || |||||| || | | Sbjct 131479 TGCGGGAAACGCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAAC-CACTTGTT 131537 Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110 | ||| | ||| || || | |||| ||| | ||| | || || ||||||| ||| Sbjct 131538 GCTCATGAGCTCGTAGGTCTCCAAGGCGGCGGGCAGATCCTCTCCATGGATACCAAGGGC 131597 Query 111111 AACTCGCATGAACATATATTGAGG 111134 ||| |||| | ||| || || || Sbjct 131598 AACGCGCAGAAGCATGTACTGCGG 131621 >seq1 Length=1546440 Score = 120 bits (132), Expect = 4e-22 Identities = 305/457 (67%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||||||||| || || |||||||| | || | || | | || |||| || || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 ||| ||||| | || |||| | ||||| |||||||| || || || |||||||| Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACCACCTGCCGAACGCTTCTTACCG 11679 | ||||| || ||||| ||||| |||| | | | ||| |||| || Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAAGCCCGCCCCG--CGCTGACGGCCC 801254 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || || |||||||| ||||| || | ||| || || ||| ||||||||||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTGTTCGAAC 801314 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG---CGGCA 11796 | || || |||||| || || || || || ||||||||||| || | | |||| Sbjct 801315 ATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCCGGCG 801374 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | || |||||||| || ||||| || |||| |||| ||| || || ||||| Sbjct 801375 G----CCGAGATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGTCTT 801430 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAA 11914 |||||| || || | || | | | | || || |||||||| || || || ||| Sbjct 801431 ACCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTCC-G 801489 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTC 11951 ||| || || |||||||||||||| || | ||| Sbjct 801490 TGTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 801526 >seq684 Length=114989 Score = 84.2 bits (92), Expect = 3e-11 Identities = 240/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||| ||||| || || | | || ||| ||| | |||||| |||||||| || || || Sbjct 14827 ATCAAAACGCCCAGGTCTTAATAAAGCTGAATCTAAAATATCTACACGGTTAGTTGCAGC 14886 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| |||| | ||| | | | || ||||| |||||||| || | |||||| || | Sbjct 14887 AATTACTATGACCCCATTATTTGTTTCAAAACCATCCATTTCAGTTAAAAGCTGATTTAA 14946 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCT---TACCGAC 11681 ||| ||||| ||||||||||| | | | ||| || | || | | ||| |||| || Sbjct 14947 CGTTTGTTCTCGCTCATCGTT--ACCACCT-CCAACTCCAGATCCCCTCTGTCTACCAAC 15003 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAG 11741 || || || ||||| || || | || || || || || || || ||||| Sbjct 15004 TGCATCTATTTCATCAATAAAAATAATGCAAGGGGTTTTTGCTTTAGCTCTTTTAAAAAG 15063 Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 ||||| | | || || | || ||||| | || || || | || || ||||| Sbjct 15064 GTCACGAATTCTTGAAGCCCCTATTCCGACGAATAATTCTACAAACTCTGATGCTGAACA 15123 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 || ||| || || || | ||| || || || ||| ||| || | || ||||| || Sbjct 15124 ACTAAAGAAAGGGACTTTTGCCTCGCCTGCAATAGCTTTAGCTAGTAATGTTTTACCTGT 15183 Query 11862 ACCAGG 11867 ||||| Sbjct 15184 CCCAGG 15189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588970964255200