Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 149 7e-31 seq29 118 1e-21 seq1 113 5e-20 seq4 87.8 2e-12 >seq6 Length=1241202 Score = 149 bits (164), Expect = 7e-31 Identities = 581/902 (64%), Gaps = 21/902 (2%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | || || || |||| ||||| || || || ||||| |||| ||| Sbjct 394350 GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGTTCTGCTGG 394291 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || || |||||| || |||||| | |||||||| ||||| || |||||| ||| Sbjct 394290 TTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCTCCACCTGG 394231 Query 106625 GACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTAC--AATGGCGTTGGC--CCGTCC 106680 || | ||||| || ||| | || ||||| | ||| | ||| | ||| Sbjct 394230 GAGTCCAGAATCGCGAACCAGA-----GCTGCTGGGCCTTAATAACCTTGCGTGCTTTCC 394176 Query 106681 CTC-CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 | | | |||||| | | |||||| | ||||||||| || | |||| | || | Sbjct 394175 CACTCTTCTCGTAGCTGGCGTAGAGCTGGTTAAACTCCTCGCCGCACACGTCCGCCAGGC 394116 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || || || || || ||||| ||||| | || | ||| || ||| ||||| Sbjct 394115 CCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCGCTCTCCACGCGCCGCATGA 394056 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCT 106858 | ||||| || |||| |||| | || ||||| | | ||| | || |||| || Sbjct 394055 ACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCAC-GCTCCAACTCGTTGCCG 393997 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||||| || | || ||||| || | ||| || || ||||| ||||| || |||| Sbjct 393996 TGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCTCTAGGTAGATG 393937 Query 106919 GCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 106975 |||| || ||||| || ||| | | || | || ||||| || || |||| || Sbjct 393936 GCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCGTATCGTTGAAA 393877 Query 106976 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATT 107033 ||||| ||||| || | || || | || || || | || ||||| | ||| Sbjct 393876 ACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAATGTAGGAG--- 393820 Query 107034 TATTG-GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 107092 | | | || | | | |||||| | ||||| || || || | || || || Sbjct 393819 TCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGGAAATGGCA 393760 Query 107093 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 107152 || || | | | || || | ||||| |||| ||| ||||||||||| ||| | ||| Sbjct 393759 GCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGGTCAGGAGG 393700 Query 107153 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 ||||| ||| | || || | ||||| || |||||||| || || || || || || Sbjct 393699 AAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCGTAGCATGC 393640 Query 107213 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 |||| | | ||||| | ||| ||||||| | | ||||||| || | Sbjct 393639 GTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGTTCTCTTTG 393580 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCG 107332 ||||| || || ||||||||||| | ||||| ||||| ||||| | | || | Sbjct 393579 TGGATACCAATTGCCACACGCATGATCATGTGCTGGGGGCGCTCCATAACTACCCCGTTC 393520 Query 107333 AGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCC 107392 | | |||| || ||| || || ||||| | |||||||| || ||||| ||||| Sbjct 393519 ATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTCC 393460 Query 107393 CG 107394 || Sbjct 393459 CG 393458 >seq29 Length=316797 Score = 118 bits (130), Expect = 1e-21 Identities = 295/448 (66%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || |||| ||||| || ||| ||| ||| ||||| | | || || || ||| Sbjct 130777 GACGCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCAC 130836 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | || || ||| || || ||||| |||| |||||| ||||| |||||| || ||| Sbjct 130837 AGATTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCC 130896 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACA 106648 ||||| |||||||||||||| |||||||| |||| || | | || || ||||| Sbjct 130897 TTGTACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAAG 130956 Query 106649 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 106708 || || | || | ||| | || ||||| ||||| ||| || ||| | Sbjct 130957 TCCTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAATATAGGTCC 131016 Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 || ||| || ||| | |||||| || || || ||||| | || ||| Sbjct 131017 CGGAAGGCCTGGCCGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGGGAC 131076 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 || ||| ||||||| |||| || |||||| ||||| |||||||| || | ||| Sbjct 131077 CAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATAGAAG 131136 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 ||||| | ||| ||||| || | || ||||| || | || || | || | | Sbjct 131137 AGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCAAAG 131196 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGA 106916 || ||||||||||| ||||| || |||| Sbjct 131197 ATGTCCGCGTGCCACGGCTCCAGGTAGA 131224 >seq1 Length=1546440 Score = 113 bits (124), Expect = 5e-20 Identities = 305/460 (66%), Gaps = 20/460 (4%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 |||||| ||||| || || || || | || | || | || || | ||||| || || Sbjct 801077 ACGATCGAAGCGGCCCGGGCGGAGCAAGGCCTGGTCCAAGACGTCTGCACGATTGGTGGC 801136 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 ||||||||| | || || | | || || || |||||||| |||| || ||||| Sbjct 801137 GGCGATGACGATGATCCCAGGGTTGCCCTCGAAGCCGTCCATCTCGGTCAGCAGCTGGTT 801196 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCT--GGCATACCACCAGCACTGCGTTGCTTTCCC 9368 | || || ||||| || || ||| || |||| | || || | ||| || ||| Sbjct 801197 CAGGGTCTGCTCCCGCTCGTCGTTCCCTCCGGCAAA--GCCCGCCCCGCGCTGACGGCCC 801254 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGGGCGATTTC 9424 |||||||||||||| || || || | || |||| ||| | ||||| | ||| Sbjct 801255 ACGGCATCAATCTCGTCGATAAAAATGATGCATGGCGCGTTCTTCTTCGCCTG----TTC 801310 Query 9425 AAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG---C 9481 || | |||||| || | ||| ||||| || ||||||||||| ||||| | | | Sbjct 801311 GAACATATCGCGCACACGCGAGGCACCCACCCCCACAAACATCTCAACAAACTCCGAGCC 801370 Query 9482 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 ||||| | ||||||||| || || || ||||| | |||| || || || || Sbjct 801371 GGCGGCCGA---GATGAAGGGCACGCCCGACTCCCCCGCGACGGCTTTAGCCAGCAGTGT 801427 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTTC 9600 ||||||||| || || || | | || | || || || ||||| ||||| || || Sbjct 801428 CTTACCCGTCCCGGGGGGTCCGTCCAAGATCACCCCGCGAGGGATCTTTGCGCCTACGTC 801487 Query 9601 CAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | |||| | || || | |||||| || || || | ||| Sbjct 801488 C-GTGTATTTTTCGGGGTTCTTGAGGAAGTCAACTACCTC 801526 >seq4 Length=1364975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || ||||||||||||||||| |||| | |||||| || |||||||| ||||| Sbjct 237844 GGCATCAGGCCCCGCTTCTTCAACCAGAAAATCGAGCAGAAGGAGCCGGAGAAAAAGATG 237785 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 |||||||| ||||| || | | ||||||||| || || Sbjct 237784 CCCTCCACGGCTGCAAAGGCGATCAAGCGCTCGGCAAAAGA 237744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589975755664160