Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq684 654 0.0 >seq684 Length=114989 Score = 654 bits (724), Expect = 0.0 Identities = 714/943 (76%), Gaps = 4/943 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTT 169503 |||||||| |||||| ||||||| || ||| | ||||| || || |||||| | Sbjct 68505 GGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATC 68564 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 || ||||| ||||||||||| || |||||||| || ||| | |||||||| || || || Sbjct 68565 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 68624 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 | || || || |||||||| ||| | ||||| ||| ||||| || |||||||| || Sbjct 68625 CTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGT 68684 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | |||||||||||| | |||||||| || |||| || |||||| | || || |||||| Sbjct 68685 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGT 68744 Query 169684 CCTTATCAGTTGGTAATCTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGACA 169742 ||||| || | ||| | || ||||| |||||| ||| | | ||||||||| | | Sbjct 68745 CCTTACCAACTTGTAGTATTACACTT-CTTATTAGGTGTAGCTTGCTACATGGGACGTGA 68803 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 |||||||| ||| | ||||| |||||||||||||| | || || | ||| || || Sbjct 68804 ATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCC 68863 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 |||| |||| ||| || ||||||||| | |||||| | || || ||| |||||||| Sbjct 68864 AGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGA 68923 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || Sbjct 68924 TGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACA 68983 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 |||||||| ||||| || ||||| ||||| || || || || |||| || |||||||| Sbjct 68984 CAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTT 69043 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| |||||||| ||||| ||||| || || | ||||| | ||||| ||| Sbjct 69044 ATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGG 69103 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 | || ||||| ||||| || || ||||||||||||||||| |||||||| ||||| Sbjct 69104 TGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGC 69163 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 ||||||||||||||||| ||| | |||||||| || || |||||||||||| | Sbjct 69164 TGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGC 69223 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| |||| | || || |||||| || | |||||||| || | || || Sbjct 69224 TTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAAT 69283 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTA 170281 ||||||||||||||||||| || || |||||||| |||||||||||||||||| || | Sbjct 69284 TAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCA 69343 Query 170282 ACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAG 170341 | || | || || |||| ||| || | ||| | || | || |||||||||| Sbjct 69344 A-GGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAG 69402 Query 170342 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 | ||||| ||| | || || ||||||||||| ||||| |||| Sbjct 69403 TAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 69445 Score = 590 bits (654), Expect = 7e-164 Identities = 751/1029 (73%), Gaps = 27/1029 (3%) Strand=Plus/Plus Query 170541 GACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTG 170600 || ||||||||||| |||||||||| ||||| || || ||||| ||||||||| | | Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660 || |||| || || | ||||| ||||| ||| ||||| || |||||||| ||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720 || |||||||| | ||||| || || | |||||||| |||||| |||| | ||| || Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTGTA 38097 Query 170721 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 170780 || ||||||| | ||||||||| | | || | |||||||| || |||||| Sbjct 38098 TCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACAA 38157 Query 170781 GGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGA 170840 || ||| ||||||| | ||| | || || ||||||| ||||| ||||||||||| Sbjct 38158 GGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGGG 38217 Query 170841 GTCTTTGGACTCATAGGTTTCATGCTCA-GACAATTTGAGATCGCAGGACTTGTAGGCAT 170899 | |||||| | || || ||| || | | |||||||||| || || | |||||||| || Sbjct 38218 GCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 38276 Query 170900 CAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCT 170959 | || || || ||| | ||||| || | ||||||||| ||| | | || | Sbjct 38277 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 38336 Query 170960 GATCTATCCACTAGGTC-AGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAA 171018 |||||||| |||| | |||| ||||||||||| || || || || || ||||| | Sbjct 38337 AATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 171019 TTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACA 171078 |||| || | | |||||| ||||||||||||| ||| ||| | |||||||| |||| Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 171079 TGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAG 171138 |||||||||| |||||||| ||||||| ||| |||||| ||| |||||||| || || | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 171139 TGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAA 171198 | | |||||||| | ||||| | | || ||| ||| | Sbjct 38516 TAGAAAACACATTATTCGAAGA------TGGTGATGCTGCGAAT---------------A 38554 Query 171199 CATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACA 171258 |||||||||| || || ||||| |||||||||||| ||| | ||||| |||| Sbjct 38555 CATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACA 38614 Query 171259 GATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTA 171318 |||||||||| || || |||||| ||||||| ||||||||| | | | || ||| | | Sbjct 38615 GATTCTGGTCTCAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCA 38674 Query 171319 TGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCAC 171378 |||| || ||||| || | ||| | |||||| ||| | ||||| |||||| ||||| Sbjct 38675 TGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCAT 38734 Query 171379 TTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGT 171438 | ||| | |||||||| || ||||||||||||||| | | ||||| ||||| ||||| | Sbjct 38735 TAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAAT 38794 Query 171439 TCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAAGGTATGAGAGCATGGATGTCA 171497 | || |||||||| ||||| ||||| ||| || || |||||||| ||| |||||||| | Sbjct 38795 TTGAAACTTTCTATACTAAAAATAT-CTTATTAAACGAAGGTATTAGATCATGGATGGCC 38853 Query 171498 TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAAC 171557 || |||||||||||||| || || ||||||||||| || || |||||| | || ||| Sbjct 38854 GCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAC 38913 Query 171558 GCACTTTAA 171566 || |||||| Sbjct 38914 GCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207847730560