Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq684 706 0.0 >seq684 Length=114989 Score = 706 bits (782), Expect = 0.0 Identities = 734/956 (77%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 167950 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 168009 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 168010 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCT 168069 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | || | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 168070 TCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGG 168129 ||||| |||||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 168130 TTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCG--GTATCTATG 168187 | || ||||||||||||| |||||| ||||| || |||||| | | | ||| || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788 Query 168188 CATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTG 168247 | |||||||||||||||||||||||| || |||||||| |||||||| ||||| | | Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847 Query 168248 TTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTC 168307 | || | ||| || ||||| |||||||| |||||||||||| || | || || |||| | Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907 Query 168308 AAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGG 168367 ||||||| |||||||||| ||||| | || ||||| || || ||||||| |||||| | Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967 Query 168368 TCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGG 168427 | |||||||| || ||||| ||||| ||||| || ||||||||| || |||||||| | Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027 Query 168428 TATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTA 168487 | |||||||| ||| || ||||| |||||||| | | || || ||| | | | Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087 Query 168488 GAGAGACGACTGAA-AC--CGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAG 168544 | || |||||| || | ||| |||||||||||||| || ||||||||||||| Sbjct 69088 GTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 69144 Query 168545 AAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTT 168604 |||| |||||||||||||| || || |||||||| || ||||| |||||||||||||| Sbjct 69145 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 69204 Query 168605 CATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCT 168664 ||||||||||| || | || ||||||||| | ||||| ||||| ||||| || |||| Sbjct 69205 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 69264 Query 168665 GGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACC 168724 |||| || || ||||| | ||| |||||||||||| | ||||| ||||||||||||| Sbjct 69265 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 69324 Query 168725 AGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCG 168784 | || | ||||| | || ||||||||| | ||||| ||||| || || | ||||| | Sbjct 69325 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 69384 Query 168785 CTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 69385 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 605 bits (670), Expect = 3e-168 Identities = 738/1004 (74%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 169317 TCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTC 169376 ||||||||||| | ||||| || || || ||||| ||||||||||| ||||| | | Sbjct 37916 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 37975 Query 169377 TTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCT 169436 |||| || || | |||||| |||| || ||| | || ||||| | |||||||| || | Sbjct 37976 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 38035 Query 169437 GGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTG 169496 ||||||| || ||| | ||||| ||||||||| || |||||| | |||| |||| Sbjct 38036 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTG 38095 Query 169497 TCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCAC 169556 | |||||||| | |||||| || ||| || |||| ||||||| ||||| |||| Sbjct 38096 TATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCAC 38155 Query 169557 AAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATG 169616 |||| ||||| ||| ||| |||| | ||||| | |||| ||||| ||| | |||| Sbjct 38156 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 38215 Query 169617 GTGCATTTGCATTGATTGGTTTCATGCTTA-GGCAGTTTGAATTGGCACGTCTTATTGGC 169675 | ||||||| ||| ||||| ||| || ||| | || |||||| | || |||||| | || Sbjct 38216 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 38274 Query 169676 ATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTT 169735 || ||||| |||||||| |||||||| || || ||||| || ||||| || ||| || Sbjct 38275 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 38334 Query 169736 CTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 | ||||| || | ||||| | |||||||||||||| |||||||| |||| Sbjct 38335 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 38394 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 169855 || ||| | ||||| || ||| | ||||| ||||| |||||||| | |||||||||||| Sbjct 38395 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 38454 Query 169856 ATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACA 169915 |||||||||||||||||||| || || || ||| | | ||||| || ||||| | ||| Sbjct 38455 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 38514 Query 169916 GTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCG 169975 ||||| |||||||| | ||||| ||||| || ||||| ||| || || | Sbjct 38515 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 38574 Query 169976 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 170035 ||||| |||||| |||||||| ||||| || || ||| | |||||||| || || || Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634 Query 170036 GGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 170095 ||| |||| ||||||||||| |||||||||||||| |||||||| ||||| || || | Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694 Query 170096 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 170155 ||| | |||||| ||| |||| || | || | || | || | | || || || Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 38754 Query 170156 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 170215 || || ||| ||| | | ||||| ||||||||||||||||| || ||||| || ||| Sbjct 38755 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 38814 Query 170216 AACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAA 170275 || ||| |||| || ||||| || | ||||| |||| | || |||||||||||| Sbjct 38815 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 38874 Query 170276 AACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || | |||||||| || ||| | || | || ||||| || Sbjct 38875 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574468688250720