Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq684 764 0.0 >seq684 Length=114989 Score = 764 bits (846), Expect = 0.0 Identities = 763/983 (78%), Gaps = 10/983 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| ||| | ||| |||| | ||||| | || | ||||||||||| ||| | Sbjct 68463 TTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTA 68522 Query 163845 ATGATCCCTACGCTGCTTGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163904 ||||||||||| | | |||| || | ||| |||||| |||| ||| |||| || || Sbjct 68523 ATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCT 68582 Query 163905 CCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAAC 163964 || || || ||||||||||| |||||||| || || || || || | || || |||||| Sbjct 68583 CCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAAC 68642 Query 163965 ATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATT 164024 || ||| | ||||| ||| |||| || || || |||||| ||||||||||||| || Sbjct 68643 ATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTT 68702 Query 164025 TGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTC 164084 |||||||| || || | || ||||||||||||||||||||||||| ||||||||| || Sbjct 68703 TGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTA 68762 Query 164085 TTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 || |||||| | | | ||| || ||| |||||||| ||||| |||||||| |||| Sbjct 68763 TTACACTTCTTATTAGGTGTAGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACC 68820 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 || | || |||||||||||||||| || |||| ||| || || || || |||||| | Sbjct 68821 GTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTG 68880 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 |||| ||| | | || || |||| |||||| |||||||| | ||||| | || | Sbjct 68881 CAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTA 68940 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 ||||||| || ||||||| |||||| || ||||||||||| |||||||| || ||||||| Sbjct 68941 TCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACC 69000 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | ||||||||| || |||||||| || ||||| || ||| | |||||||||||||||| Sbjct 69001 CATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACG 69060 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAA-ACTGAGTCCCAG--AACT 164439 ||||||| || || ||| | | |||||| || ||| || | || | | |||| Sbjct 69061 GTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCTGCTAACT 69117 Query 164440 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACT 164499 | |||||||| ||||| |||||||||||||| |||||||| || || || |||||||||| Sbjct 69118 ACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACT 69177 Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559 |||| ||| | |||||||||||||| ||||||||||| ||| | || ||||||||| Sbjct 69178 TTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCT 69237 Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619 | ||||| ||||| ||||| || |||||||| || || ||||| || ||| ||||||| Sbjct 69238 TAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCAT 69297 Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164679 ||||| | ||||| |||||||||||||| || | | ||| | || ||||||||| ||| Sbjct 69298 TCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCA 69357 Query 164680 ACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTA 164739 |||||||||| ||| || ||||||| |||| | | ||||||||||| |||||||| |||| Sbjct 69358 ACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTA 69417 Query 164740 ACGCTCACAACTTCCCTCTGGAT 164762 |||| |||||||||||||| ||| Sbjct 69418 ACGCGCACAACTTCCCTCTAGAT 69440 Score = 540 bits (598), Expect = 1e-148 Identities = 728/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 165204 TCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 165263 ||||||||||| | ||||||||||||||||| ||| |||||||||| || ||| | | | Sbjct 37916 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 37975 Query 165264 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTT 165323 |||| || || | |||||| |||| || ||| | || || |||||||| | || || Sbjct 37976 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 38035 Query 165324 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCA 165382 |||| || || || || || ||| || | ||||| ||| ||||| | |||| || Sbjct 38036 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCT 38094 Query 165383 GTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCT 165442 || || || || ||| | |||||||||||| | | | | ||||| || ||||| Sbjct 38095 GTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCA 38154 Query 165443 CAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 165502 ||||| ||||| | ||| | ||| | || ||| | ||| ||||||| || | || Sbjct 38155 CAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACAT 38214 Query 165503 GGGGCTTTCGCTCTAATTGGTTTCATGCTT-CGTCAGTTTGAATTAGCACGTCTCATCGG 165561 ||||| || | ||||||| ||| || || || || |||||| | || ||||| | || Sbjct 38215 GGGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGG 38273 Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621 ||| ||||| || ||||| ||||| || || || |||||||| || || ||| || || Sbjct 38274 TATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATT 38333 Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681 | ||||| ||| | || ||| | |||||||| || ||||| ||| || || ||||| Sbjct 38334 CTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGC 38393 Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741 || ||| | ||||| | ||| ||||||| |||||||||||||| | ||||| || || Sbjct 38394 TATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCA 38453 Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801 ||||||||||| ||||| || | ||||||||| | | ||||| || ||||| | ||| Sbjct 38454 CATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTAC 38513 Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGAC-T 165860 ||||| || || | | |||||||||| | ||| ||||| ||| || ||| || Sbjct 38514 TGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACAC 38572 Query 165861 CTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 165920 | || ||| |||||||| || |||||||| || || ||| | ||||||||||| || | Sbjct 38573 CAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTT 38632 Query 165921 TCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 165980 | ||| |||| ||| ||| || | ||| | |||||||| ||| | |||||||| || | Sbjct 38633 TTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAA 38692 Query 165981 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 166040 ||| | ||||||||||| | ||||| | ||| | || | ||| | | || |||| Sbjct 38693 CAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATG 38752 Query 166041 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGA 166100 |||||||||| |||||| | | ||||| ||||| ||||| |||||||| ||||| || | Sbjct 38753 ACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTA 38812 Query 166101 AAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATG 166160 |||| || | || || |||||| || | | ||| |||| || || ||||| |||| Sbjct 38813 AAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATG 38872 Query 166161 AGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || ||||| ||||| || || ||| | || | || ||||| || Sbjct 38873 AAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556920038292960