Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq684 645 4e-180 >seq684 Length=114989 Score = 645 bits (714), Expect = 4e-180 Identities = 711/940 (76%), Gaps = 10/940 (1%) Strand=Plus/Plus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||||||||| | |||||||| || | ||||| || ||||||||| | Sbjct 68505 GGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATC 68564 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || ||||| ||||||||||| || |||||||| || ||| | |||||||| || || || Sbjct 68565 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 68624 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | ||||| || |||||||| ||| | ||||| ||| ||||| || ||||| || ||| Sbjct 68625 CTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGT 68684 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||||||||| | |||||||| || | ||||| |||||| | ||||| |||||| Sbjct 68685 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGT 68744 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || | ||| | || |||||| | | ||| | | ||||||||| | | Sbjct 68745 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 68804 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||||| ||| | ||||| ||| | || ||||| | ||||| | ||||| || Sbjct 68805 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 68864 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 ||| | |||||| ||| || ||| | | || ||| |||| || ||| ||||||||| Sbjct 68865 GTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGAT 68924 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| |||||||||| ||||| |||||||| ||||| || ||||||||||| || Sbjct 68925 GGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 68984 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 |||||||| ||||| || ||||| ||||| || || || || ||||||| ||||||||| Sbjct 68985 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTA 69044 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAA--- 172458 ||| ||||||||||||||| | || |||||| | ||||| | || ||||||| Sbjct 69045 TTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGAC 69101 Query 172459 GCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 172518 | | ||| |||||||| ||||| || ||||||||||||||||| |||||||| ||| Sbjct 69102 GGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTA 69161 Query 172519 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGA 172578 || ||||||||||||||||| ||| | |||||||| || || ||||||||||||| | Sbjct 69162 GCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGT 69221 Query 172579 AGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 172638 | | ||||||||| |||| | || || |||||| || | |||||||| || | || Sbjct 69222 GCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGA 69281 Query 172639 ATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGAT-GC 172697 || | ||||||||||||||| | ||||| ||||||||||||||||||||||| ||| || Sbjct 69282 ATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGC 69341 Query 172698 TAACGGTAAGATTGTTC-CTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGG 172756 || ||| | || || || |||| |||| || | ||| | || | ||||||||| Sbjct 69342 CAA-GGT-CGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGG 69399 Query 172757 AAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGA 172796 |||| ||||| ||| | || || ||||||||||| |||| Sbjct 69400 AAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 533 bits (590), Expect = 2e-146 Identities = 749/1050 (71%), Gaps = 25/1050 (2%) Strand=Plus/Plus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGG 173000 ||||||| ||||| | | || ||||||||||| |||||||||||||||| || || Sbjct 37896 AAGAGGTCTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGG 37955 Query 173001 ATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGG 173060 ||||| ||||||||| | | || || | ||| | | ||||| ||||| ||| Sbjct 37956 TTGGTCAGGTCTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGG 38015 Query 173061 AACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGC 173120 ||||| || |||||||| ||||| |||||||| | || ||||| || | || ||| Sbjct 38016 TACTACTTTTGTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATG 38075 Query 173121 AAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTT 173180 ||||| ||||| | ||| || || ||||||| | ||||||||| | | || Sbjct 38076 CAACTTCTTAACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTT 38135 Query 173181 CCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATG 173240 | |||||||| || |||||||| || |||||| | ||| | || ||| |||| Sbjct 38136 ATTATGGGGACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATG 38195 Query 173241 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGA 173300 || ||||| ||||||||||| | |||||| | || || ||| | || || ||||| Sbjct 38196 GACTTTTGTCGCATTACATGGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGA 38255 Query 173301 GATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGC 173360 || || | |||||||| || | || || || ||| | ||||| || | |||||| Sbjct 38256 AATTGCTCGTCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGC 38315 Query 173361 AGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGC-AGCACAGTTGGTTCTTCGCAC 173419 ||| ||| | | || |||||||| || |||| | |||| ||||||||||| || | Sbjct 38316 AGTATTCGTTTCTGTATTCTTAATCTATCCTTTAGGACAAGCA-AGTTGGTTCTTTGCTC 38374 Query 173420 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACA 173479 || || || || ||||| || || || | | |||||| ||||||||||||| ||| Sbjct 38375 CTAGTTTTGGAGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACT 38434 Query 173480 TTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTAT 173539 ||| | |||||||| |||||||||||||| |||||||| ||||||| ||| || ||| Sbjct 38435 GGACACTTAATCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTAT 38494 Query 173540 GTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTG 173599 ||| |||||||| || || || | |||||||| | |||| || || Sbjct 38495 CTGCAATTCATGGAGCTACTGTAGAAAACACATTATTCGAAG------------ATGGTG 38542 Query 173600 AAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTT 173659 | | | || | || ||| | || || || ||||| ||||||||||| Sbjct 38543 ATGCTGCGAAT---------ACATTCCGTGCTTTCACACCAACACAATCAGAAGAAACTT 38593 Query 173660 ATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACA 173719 || ||| | |||||||||||||||||||| || || |||||| | || ||||| |||| Sbjct 38594 ATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGGTGTTGCTTTTTCTAACA 38653 Query 173720 AAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCA 173779 || | | | || ||| ||||||| || || || || | ||| | |||||| || Sbjct 38654 AACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTT 38713 Query 173780 TAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 173839 | ||||| |||||| | ||| | ||| | |||||||| |||||||||||||||||| | Sbjct 38714 TTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTTTGTATCTCAAGAGCTTC 38773 Query 173840 GAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTT-AATGAA 173898 | ||||| ||||||||||| || || |||||||| ||||| ||||| ||| || || ||| Sbjct 38774 GTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAATAT-CTTATTAAACGAA 38832 Query 173899 GGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAA 173958 ||||| ||| |||||||| | | || ||||||||||| || || ||||| ||||| Sbjct 38833 GGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAATTTTGTATTCCCAGAG 38892 Query 173959 GAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 || || |||||| | || ||||| |||||| Sbjct 38893 GAGGTTTTACCACGTGGAAACGCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046172162240