Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq684 710 0.0 >seq684 Length=114989 Score = 710 bits (786), Expect = 0.0 Identities = 731/953 (77%), Gaps = 6/953 (1%) Strand=Plus/Plus Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 162472 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 162531 | ||| |||||| |||| ||| |||| || || || || || ||||| || ||||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 162532 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 162591 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 162592 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 162651 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 162652 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCC 162711 || || ||||||||||||| |||||| |||||||| |||||| | | || | | | Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGC 68789 Query 162712 TACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTA 162771 ||||||||||||||||||||||| |||||| | || |||||||| ||||| | |||| Sbjct 68790 TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTA 68849 Query 162772 GCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 162831 || | ||| || || || || |||||| ||||| ||| | | || || |||| ||| Sbjct 68850 GCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAA 68909 Query 162832 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTC 162891 ||| |||||||| | ||||| || |||||| |||||| ||||||| |||| | || Sbjct 68910 GGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTA 68969 Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||||||||||| ||||||||||| ||||| || ||||| ||| ||||| || ||||| Sbjct 68970 TTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTG 69029 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 163011 || ||||| || | ||||||||||||||||||||| | || |||||| | ||||| Sbjct 69030 TTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 69089 Query 163012 GAGACGACTGAA-ACTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 163068 || |||||| || | || | | ||||| |||||||| || || ||||||||||| Sbjct 69090 GA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAA 69146 Query 163069 ACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 163128 || ||||||||||| || || || |||||||| || ||||| ||||||||||| ||| Sbjct 69147 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGT 69206 Query 163129 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 163188 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 69207 TTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 69266 Query 163189 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 163248 || || || ||||| | || |||||||||||| | ||||| |||||||||||||| Sbjct 69267 TTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAA 69326 Query 163249 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCA 163308 || | ||||| | || ||||||||| | ||||| ||||| ||| || | |||||||| Sbjct 69327 TCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCT 69386 Query 163309 GGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGA 163361 | ||| ||||||||||| |||||||| || || || ||||||||||| || || Sbjct 69387 GATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 565 bits (626), Expect = 3e-156 Identities = 736/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 163633 GATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTT 163692 ||||||||| | || || |||||||||||||||||||||||||| || | || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 163693 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGG 163752 || || || | | | ||| ||||||| ||| | || ||||| ||||| ||||| || ||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 163753 TACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCTCACAGCGGCTGT 163811 ||||| |||||| | || |||| || | ||||| ||| || || | || | ||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 163812 GTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTC 163870 ||||| ||||| | |||||||||||| || |||| | ||||| || ||||| | Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTC-ATTGATCTTATTATGGGGACCAGAGGCAC 38155 Query 163871 AGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 163930 | || ||||| || ||| | ||| | || ||| | |||| |||||| ||| | || | Sbjct 38156 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 38215 Query 163931 GAGCCTTTGCTCTCATTGGTTTCATGCTT-CGGCAATTTGAACTTGCTCGCCTGATTGGA 163989 | || |||| | ||||| ||| || || || ||||||||| ||||||| || | || Sbjct 38216 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 38274 Query 163990 ATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 164049 || | || || ||||| ||||| || || || ||||| || || |||||| ||| || Sbjct 38275 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 38334 Query 164050 CTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCA 164109 | ||||| ||| | || ||| ||||||||||||| ||||| ||||||||| ||||| Sbjct 38335 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 38394 Query 164110 ATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCAT 164169 || ||| ||||||| |||||| | ||||| || ||||||||||| | || || ||||| Sbjct 38395 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 38454 Query 164170 ATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACA 164229 |||||||| || || || || |||| || ||| | ||||||| ||||| |||| || Sbjct 38455 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 38514 Query 164230 GTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCG 164289 || ||||| ||||| | |||||||| || || || || || || || | Sbjct 38515 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCA 38574 Query 164290 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 164349 ||||| |||||| |||||||| ||||| || || ||| | |||||||| || || || Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634 Query 164350 GGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 164409 |||||||| ||||||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694 Query 164410 GGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 164469 ||| |||||||| ||| |||| || | || | || | || | | || || || Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 38754 Query 164470 TTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAG 164529 |||||| ||||||| || | ||||| |||||||| || || || ||||||||||| || Sbjct 38755 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 38814 Query 164530 AACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAA 164589 || |||||||| |||||||| | | ||||| | || || ||||| ||| ||| Sbjct 38815 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 38874 Query 164590 CGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAATA 164639 ||||| |||||||| || || | || | || || || |||||||| Sbjct 38875 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557579232656800