Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq684 655 0.0 >seq684 Length=114989 Score = 655 bits (726), Expect = 0.0 Identities = 735/989 (74%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 ||||| ||| ||| |||| | || ||||| | |||||| | || ||||||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTC 167198 || ||| | ||||||||||| || | |||| || | ||| ||||||||||| ||| || Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 167199 GGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTAT 167258 | || ||||| || || |||||||||||||| |||||||| ||||| ||||| | || Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 167259 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTC 167318 || |||||||| ||| | ||||| ||| |||| |||||| ||||||||| |||||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 167319 TATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAA 167378 || || | |||||||| || | | ||||| ||| | ||||| |||||||||| |||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 167379 CTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTC 167438 || ||||| || |||||| | | || | | ||| ||||| ||||| |||||||| Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 68813 Query 167439 TCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCA 167498 |||||| | || |||||||| ||||| | || || | ||| |||||||| |||||| Sbjct 68814 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 68873 Query 167499 GCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCT 167558 ||| ||| |||||| | | || || |||| |||||| |||||||| | |||||| Sbjct 68874 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 68933 Query 167559 CTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 167618 | |||||||||||||| ||||||| |||| | || ||||||||||| |||||||| || Sbjct 68934 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 68993 Query 167619 ATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCA 167678 |||||||| ||||||||| || |||||||| || || || || ||| | ||||||||| Sbjct 68994 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 69053 Query 167679 ATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAA-ACTGAGTCCCA 167737 |||||||||||||| || || ||| | | |||||| || ||| || | || | Sbjct 69054 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAA---ACTGAAGACGGTGTATCT 69110 Query 167738 G--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCAT 167795 | ||||| |||||||| || || || |||||||| || || |||||||| ||||| || Sbjct 69111 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 69170 Query 167796 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCAC 167855 |||||||| || || | ||||||||||||||| ||||||||||| || | | ||| Sbjct 69171 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 69230 Query 167856 TTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNN 167915 |||||||| || || ||||| ||||| |||||||||| Sbjct 69231 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 69290 Query 167916 NNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAG 167975 ||||||| | ||||| |||||||||||||| || | ||||||| ||| Sbjct 69291 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 69350 Query 167976 GTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCAC 168035 || | |||||||| ||| | |||||||||||| | | ||||||||||| |||||| Sbjct 69351 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 69410 Query 168036 GAGCGTAATGCTCACAACTTCCCTCTCGA 168064 || ||||| || |||||||||||||| || Sbjct 69411 GAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 540 bits (598), Expect = 1e-148 Identities = 726/1005 (72%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 168493 TCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTT 168552 ||||||||||| | ||||| ||||||||||| ||| |||||||||| || ||| | | | Sbjct 37916 TCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTAT 37975 Query 168553 TTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTT 168612 |||| || || | |||||| |||| || ||| | || || ||| |||| || || || Sbjct 37976 TTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTT 38035 Query 168613 GGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAG 168672 |||| || || || || || ||| || | ||||| ||||| | |||| || | Sbjct 38036 GGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAACTTCTTAACTGTAGCTG 38095 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 | || || ||| || |||||||||||| | | | | ||||| || ||||||| Sbjct 38096 TATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCAC 38155 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 |||| ||||| | ||| |||| | || ||| | ||| ||||||| || | || | Sbjct 38156 AAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATG 38215 Query 168793 GGGCTTTCGCTCTAATCGGTTTCATGCTT-CGTCAGTTTGAACTGGCACGTCTCATCGGT 168851 |||| || | |||| || ||| || || || || |||||| | || ||||| | ||| Sbjct 38216 GGGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGT 38274 Query 168852 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 168911 || ||||| || ||||| ||||| || || || |||||||| || || ||| || || Sbjct 38275 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 38334 Query 168912 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 168971 | ||||| ||| | || ||| | |||||||| || ||||| ||| || || |||| Sbjct 38335 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 38394 Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCAT 169031 || ||||||||||| | ||| ||||||| ||||||||||||||||| |||||||| || Sbjct 38395 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 38454 Query 169032 ATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACA 169091 ||||||||||||||||| ||||| || || || | | ||||| |||||||| | ||| Sbjct 38455 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 38514 Query 169092 GTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGC 169151 ||||| || || | | |||||||||| || ||||| ||| || ||| ||| | Sbjct 38515 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACC 38573 Query 169152 -ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 || || ||| || || ||||||||||| || || ||| | ||||||||||| || || Sbjct 38574 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTT 38633 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 |||| |||| || ||| || | ||| | |||||||| ||| | |||||||| || | Sbjct 38634 TGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAAC 38693 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | ||||||||||| | ||||| | ||| | || | ||| | | || ||||| Sbjct 38694 AGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGA 38753 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 |||||| || |||||| | | ||||| ||||||||||| ||||| || ||||| || || Sbjct 38754 CTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAA 38813 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || ||| | || ||||||||| || | ||||| | || | || ||||| ||||| Sbjct 38814 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGA 38873 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || ||||| ||||| ||||| || | || || || || ||||| Sbjct 38874 AAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCT 38918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560603206801600