Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq684 619 2e-172 >seq684 Length=114989 Score = 619 bits (686), Expect = 2e-172 Identities = 717/965 (74%), Gaps = 6/965 (1%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | |||||||| ||||| | ||||| ||| | | || Sbjct 68484 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACA 68543 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 ||||| | || |||||| | || |||||||| |||||||| || |||||||| || ||| Sbjct 68544 GCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATC 68603 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || ||||| ||||| || | | || || |||||||| ||| | ||||| ||| | Sbjct 68604 CGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATT 68663 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || ||||| ||||| || || | ||||||||||| | |||||||| || | || ||| Sbjct 68664 CCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGAC 68723 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||||| ||||| ||||| |||| |||||| || | || |||||| | | ||| | Sbjct 68724 GAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTA 68783 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| ||| | | ||||||||| ||| | ||||| ||| | |||||||| Sbjct 68784 GCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATT 68843 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 | || |||| ||| || || ||| |||| || |||||||||| | | || ||| || Sbjct 68844 TTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATC 68903 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 || || ||| |||||||||| |||||| | || |||||||| || ||||||| |||| Sbjct 68904 GGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATG 68963 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 || || ||||| || || ||||||||||| |||||||||||||| ||| ||||| ||| Sbjct 68964 TTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCT 69023 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| || ||||| || || ||| ||||||||||||||| ||||| |||||| | || Sbjct 69024 GGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTA 69083 Query 215915 ATCAGAGAGACAACTGAGCA---AGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 ||| | || |||||| | | |||| |||||||||||||| || |||||||| Sbjct 69084 ATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAA 69140 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 69141 GAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATAC 69200 Query 216032 GCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGT 216091 ||| ||||||||||||| | | | ||||||||| | || || | || ||| | || Sbjct 69201 GCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGT 69260 Query 216092 ATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTC 216151 |||||| |||||| | || | || ||||| |||||| | ||||| ||||||||| Sbjct 69261 ATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTC 69320 Query 216152 AACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAAC 216211 ||||| || || || || ||| || || |||||||| ||| || | ||| Sbjct 69321 AACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAAC 69380 Query 216212 AGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGAC 216271 | || | | |||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 69381 CGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Query 216272 TTGGC 216276 || || Sbjct 69441 TTAGC 69445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745075229552320