Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq684 722 0.0 >seq684 Length=114989 Score = 722 bits (800), Expect = 0.0 Identities = 738/957 (77%), Gaps = 12/957 (1%) Strand=Plus/Plus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||| | || |||||||||| ||||| | |||||||| || | || | || || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| |||||| | |||||| | ||||||||||| || |||||||| |||||||| ||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| | ||| Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || ||||| |||||| |||||||||||||| | ||||||||||| || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC- 182119 || || ||||||||||||| |||||| || || || |||||| | | || | || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGG--TGTA-GCT 68786 Query 182120 --CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 ||||||||||||||| ||||||||| ||||| ||||| |||||||| ||||| | Sbjct 68787 TGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTC 68846 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 ||||| | ||| |||||||| ||||||||| ||| ||||||||| | || || |||| Sbjct 68847 GTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGA 68906 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 |||||| ||||| |||| ||||| | || ||||| || || ||||||| ||||| Sbjct 68907 CAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTA 68966 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || |||||||| || ||||||||||||||||| || ||||| ||| ||||| || ||| Sbjct 68967 GTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGT 69026 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 || || ||||| || | || |||||||||||||||||| | || |||||| | || Sbjct 69027 GTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATC 69086 Query 182418 CGTGAGACGACTGAGCAAGA-GTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAA 182474 ||||| || ||| | | || | | ||||| |||||||| || || ||||||||| Sbjct 69087 CGTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAA 69143 Query 182475 GAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCA 182534 || || || |||||||| || || || || ||||| || ||||| ||||||||||||||| Sbjct 69144 GAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCA 69203 Query 182535 TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATC 182594 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || ||| Sbjct 69204 AGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATC 69263 Query 182595 TGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAAC 182654 ||||| || || ||||| | ||| |||||||||||| | ||||| |||||||||||| Sbjct 69264 TGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAAC 69323 Query 182655 CAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGT 182714 || || | ||||| | || |||||||| | ||||||||||| || | | |||||| Sbjct 69324 CAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGT 69383 Query 182715 GCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGAT 182771 |||| | | ||||||||||| ||||| || |||||||| ||||||||||| |||||| Sbjct 69384 GCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 515 bits (570), Expect = 5e-141 Identities = 731/1012 (72%), Gaps = 12/1012 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | ||||| ||||| || || ||| | || ||||| || || || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || || || | |||||| |||| || ||| | || || || |||||||||| |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 183371 || || |||||| | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | |||||||||||| | | ||| | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| || ||| ||| | || ||| | |||| |||||| ||| | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTGAACTTGCTCG-CTTGATTGGT 183549 || |||| | ||||| ||| || || ||||| |||||| ||||||| |||| | ||| Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTG-TAGGT 38274 Query 183550 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTC 183609 || ||||| || ||||| ||||| || || || ||||| || || || || ||||||| Sbjct 38275 ATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTC 38334 Query 183610 CTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCA 183669 | |||||||| | || || | ||||||||||| |||||||| || || ||||| Sbjct 38335 TTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCT 38394 Query 183670 ATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 || || |||||||||| ||| | || |||||||| |||||||| | || || ||||| Sbjct 38395 ATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCAC 38454 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 |||||||| || || || || |||| || |||||| | ||| || ||||| | || Sbjct 38455 ATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACT 38514 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 ||||| || ||||| | |||||||| || || || |||||| || ||| | || Sbjct 38515 GTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACC 38573 Query 183850 -ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 || ||| |||||| || ||||| ||||| |||||||| | |||||||| ||||| || Sbjct 38574 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTT 38633 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 || ||||| ||| || || |||||| | || ||||| ||||| |||||||| || | Sbjct 38634 TGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAAC 38693 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATG 184027 ||| | ||| |||| |||| || | | || || |||| ||| | || |||| Sbjct 38694 AGGTTTATGGACAAGTTCTTTTGGTAT-AGTAGGTTTAGCATTAAACTTAAGAGCATATG 38752 Query 184028 ATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAA 184087 | |||||| ||||||| | | ||||| ||||||||||||||||| || ||||| || | Sbjct 38753 ACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTA 38812 Query 184088 AGAACATACTTCTT-AATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACAT 184146 | || || ||| || || ||||| | | ||||| | || | || ||||||||| Sbjct 38813 AAAATAT-CTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACAT 38871 Query 184147 GAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGAT 184198 || |||||| |||| ||||||||||| ||||| | || || || |||| || Sbjct 38872 GAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611690769999200