Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq684 711 0.0 >seq684 Length=114989 Score = 711 bits (788), Expect = 0.0 Identities = 753/989 (76%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 164755 TGGGAGTCTTTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTC 164814 |||||| || ||| ||| | ||| ||| | |||||| | || ||||||||||| Sbjct 68454 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 68513 Query 164815 GGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTTATTACTGCATTCATC 164874 |||||| | |||||||| || | | ||||||| || || || | || |||||| Sbjct 68514 GGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 68573 Query 164875 GCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTAC 164934 || || || || || || || |||||||| |||||||| || || || || || | ||| Sbjct 68574 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 68633 Query 164935 GGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTC 164994 || |||||||| ||| | ||||| || |||| ||||||||| || || |||||||| Sbjct 68634 GGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTC 68693 Query 164995 TATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAG 165054 || || ||||||||||||| | | || |||||| | |||||||||||||||||||| Sbjct 68694 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAA 68753 Query 165055 TTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTG 165114 | || || || |||||| | | |||||||||||||||||||| ||||| |||||||| Sbjct 68754 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 68813 Query 165115 TCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCT 165174 ||||| | || |||||||||||||||| |||||| | || || || ||||| Sbjct 68814 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 68873 Query 165175 GCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCT 165234 || ||||| ||| | | || || |||| ||||| || |||||||||||||||||| Sbjct 68874 GCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 68933 Query 165235 CTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTT 165294 | ||||||||||||||||| |||| ||||| || |||||||||||||| ||||||||| Sbjct 68934 TTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 68993 Query 165295 ATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCT 165354 ||||| || ||||| ||| || |||||||| || || ||||||||| | ||| ||| Sbjct 68994 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCA 69053 Query 165355 ATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAA-ACAGAGAGTCA 165413 ||||| || |||||| || || | |||| || ||||||| || | | || Sbjct 69054 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCT 69110 Query 165414 G--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCAC 165471 | ||||||||||| || ||||||||||||||||| || || |||||||| ||||| ||| Sbjct 69111 GCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACAC 69170 Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || ||||| || ||| | || |||||||||||| |||||||| || ||| | | ||| Sbjct 69171 GGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACAC 69230 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 165591 |||||| | || || ||||| || || ||||||||||| ||||||||||| ||||||| Sbjct 69231 TTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACA 69290 Query 165592 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAA 165651 |||||||||||| | ||||| |||||||||||||| || |||||||||| || Sbjct 69291 ATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGT 69350 Query 165652 ATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCAT 165711 | ||| |||||||||||| || | |||||||||| | | ||||||||||| ||||| Sbjct 69351 GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 69410 Query 165712 GAGCGTAACGCTCACAACTTCCCCCTCGA 165740 || |||||||| ||||||||||| || || Sbjct 69411 GAACGTAACGCGCACAACTTCCCTCTAGA 69439 Score = 562 bits (622), Expect = 3e-155 Identities = 732/1007 (73%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||| | ||||||||||||||||| ||| |||||||||| || ||| | | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || || || | |||||| |||| || ||| | || || |||||||| || || |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGT 166351 || || |||||| | || ||| | ||||| ||| ||||| | |||| || || Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 166352 TTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCA 166411 || || || ||| || |||||||||||| | | | | ||||| || ||||| || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 166412 AGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGG 166471 ||| ||||| | ||| ||| | || || | ||| | ||||| || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 166472 TGCTTTTGCCCTAATTGGTTTCATGCTT-CGGCAGTTTGAAATCGCTCGTCTAGTAGGTA 166530 || |||| ||||||| ||| || || || || |||||||| |||||||| ||||||| Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 166531 TTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTC 166590 |||||||||| |||||||| || ||||| || ||||| || || |||||| ||| || Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 166591 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAA 166650 | ||||| ||| | || ||| | |||||||| || ||||| ||| || || |||| | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 166651 TCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATA 166710 | ||||||||||| | ||| | ||||| ||||| ||||||||||| || ||||| || | Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 166711 TGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAG 166770 |||||||||||||||| ||| | ||||||||| | | ||||| || ||||| | ||| | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 166771 TAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTA 166830 |||| ||||| | | |||||||||| || ||||| ||| || ||| | | Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAA 38575 Query 166831 CTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCG 166890 | ||| |||||||| ||||||||||| ||||| ||| | | |||||||| || || | Sbjct 38576 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTG 38635 Query 166891 GTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGG 166950 || |||| ||| ||| || | ||| | |||||||| ||| | |||||||| || | | Sbjct 38636 GTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAG 38695 Query 166951 GTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACT 167010 || | ||||||||||| | ||||| | ||| | || | ||| | | || ||||||| Sbjct 38696 GTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACT 38755 Query 167011 TTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGA 167070 |||| || ||||| || | ||||| || ||||| || |||||||| |||||||| || | Sbjct 38756 TTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAA 38815 Query 167071 ACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGA 167130 | || | || || || ||||| | || |||||||| | || ||||| ||||| | Sbjct 38816 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAA 38875 Query 167131 GTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||| |||||||| || |||||| | || | || ||||| || ||| Sbjct 38876 ATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563655980700160