Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 114 3e-20 seq9 104 5e-17 >seq3 Length=1384164 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || |||||||| ||||| ||||| || | || || | || || Sbjct 138224 CAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCGTC 138165 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| |||||||| || || || || || || || |||||||| || ||||| Sbjct 138164 TTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 138105 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||| |||||||| || || || ||||| || Sbjct 138104 TTGAATCTTTTGCTTCACATTTTCGATGGTATC 138072 >seq9 Length=1164708 Score = 104 bits (114), Expect = 5e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 194974 AGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGA 195033 || || |||||||| ||||||||||| || || || || || || || || || || || Sbjct 608009 AGTGTCCTCCCATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGG 608068 Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || || || ||||| || || |||||||| || |||||||||||||| ||||| Sbjct 608069 ATCCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACG 608128 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||| ||||| || |||| || || ||||| | |||||| Sbjct 608129 TCCAAAGTAATGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTGCAT 608175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471876780628