Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq684 650 0.0 >seq684 Length=114989 Score = 650 bits (720), Expect = 0.0 Identities = 759/1022 (74%), Gaps = 2/1022 (0%) Strand=Plus/Minus Query 83944 TTAGTGCTACAGGAGTAACAGAAACTGACGCAAGATCCAACGGGAAGTTATGTGCGTTAC 84003 ||| ||| || ||| |||| | | ||| | ||| | |||||||| || ||||||| Sbjct 69474 TTAATGCAACTGGAAGAACATTAGATACCGCTAAATCTAGAGGGAAGTTGTGCGCGTTAC 69415 Query 84004 GTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGA 84063 |||||||||| ||||||||||| | | ||||| || | | || ||||| || |||| Sbjct 69414 GTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTGATAATGTCAGCCCAAGTGTTGA 69355 Query 84064 CAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATG 84123 ||||| ||||||||| |||| || |||||||| ||||| || | || |||| Sbjct 69354 TCACACGACCTTGGCTATCAACAACTGATTGGTTGAAGTTGAATCCGTTTAAGTTGAATG 69295 Query 84124 CCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGA 84183 |||| ||||||| || ||||||| ||||| || || || |||||||||||||| |||| Sbjct 69294 CCATTGTGCTAATTCCAAGAGCAGTTAACCAGATACCTACAACTGGCCAAGCAGCTAAGA 69235 Query 84184 AAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGT 84243 | ||||| | || ||| |||||||| || || |||||||| | ||| || |||| Sbjct 69234 AGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCGTATTGGAAGATTAAACGTCCAAAGT 69175 Query 84244 AGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGT 84303 | ||||| ||||| || || || |||||||| |||||||| || || |||||||| |||| Sbjct 69174 AACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCAAATTTGTAACCGTAGT 69115 Query 84304 TTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCA 84363 | || ||| ||| |||||| ||||||| | ||| || ||||| ||||| |||| Sbjct 69114 TAGCAGATACACCGTCTTCAGTTTCACGGATTAAACTAGATGTTACAAGAGAACCGTGCA 69055 Query 84364 TTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCA 84423 ||||| ||||| || |||||| || ||||||||||| || ||| || || || |||| Sbjct 69054 TTGCACTGAATAAAGATCCACCAAACACACCAGCAACACCAGCCATATGGAATGGGTGCA 68995 Query 84424 TAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAA 84483 |||| ||||| ||||| || ||||| || | |||| ||||||| || || |||||||| | Sbjct 68994 TAAGAATGTTGTGTTCTGCTTGGAATACTAACATGAAGTTGAAAGTACCAGAGATACCTA 68935 Query 84484 GTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATG 84543 ||||| ||||||||||| |||||| |||| || || | | |||||| ||| || Sbjct 68934 AAGGCATACCATCAGAGAAGCTACCTTGTCCGATTGGGTAAATTAAGAATACTGCACTTG 68875 Query 84544 CCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATG 84603 | || || |||||||| ||| |||| || | ||||| |||||||| || | ||| || Sbjct 68874 CTGCAGCTACTGGAGCTGAGAAAGCTACGAAAATCCAAGGACGCATCCCTAAACGGTAGC 68815 Query 84604 AAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||||||||| |||||||| |||| | |||| | | |||||| || || ||| Sbjct 68814 TAAGTTCCCATTCACGTCCCATGTA-GCAAGCTACACCTAATAAGAAGTGTAATACTACA 68756 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722 ||||| ||||| ||||| || || ||||||||||| | | || |||||||||| || Sbjct 68755 AGTTGGTAAGGACCACCGTTGTAAAGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGG 68696 Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782 ||||| || | ||||||||| ||||| ||||| || ||||| | || ||||||||| Sbjct 68695 TAGAAGTGAATACCAATAGCGTTAGAACTTGGAATAACCGCACCTGTGATAATGTTGTTT 68636 Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 ||||| | || || ||||| ||||| ||||||||||| || ||||| ||||| ||||| Sbjct 68635 CCGTATAAAAGTGATCCAGCCACTGGTTCACGGATACCATCGATATCTACTGGAGGTGCT 68576 Query 84843 CCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTT 84902 | | ||| || |||||||| ||| || || | | || || || ||||| | | Sbjct 68575 GCGATGAAAGCGATGATGAAGCAGCTTGTAGCTGTTAATAATGTAGGGATCATTAAAACA 68516 Query 84903 CCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAGTTCTGC 84962 || |||||||| | || | |||||| | ||| |||| |||| |||||| || | Sbjct 68515 CCGAACCAACCGATGTATAAACGGTTTTCTGTGCTAGTGATCCAAGAGCAGAAGCGCTCC 68456 Query 84963 CA 84964 || Sbjct 68455 CA 68454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571268715610720