Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq684 547 2e-151 >seq684 Length=114989 Score = 547 bits (606), Expect = 2e-151 Identities = 715/981 (73%), Gaps = 14/981 (1%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||| || || ||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||| | ||||||||||||||| || || | || | | |||||| ||||| Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGAT 69326 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || |||||||| || ||||| | || || ||||| ||| | ||| | ||| || | | Sbjct 69325 TGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAAC 69266 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAG 36212 || || | || ||||||||||| | |||||| |||||| || || || || Sbjct 69265 CAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 69206 Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 || || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 69205 CTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 69146 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 36330 ||||||||||| || ||||| || || ||||| |||| || || || ||||||| Sbjct 69145 TCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACA--CCGTCTTCAGTTTCAC 69088 Query 36331 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 36390 | || | || || |||||| |||||||| ||| |||||||| |||||| || | Sbjct 69087 GGATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACA 69028 Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450 | || |||||||| ||||||||| || |||||||| || ||||||||||| || || | Sbjct 69027 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 68968 Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 | ||||| || |||||||| || || ||||| | |||||||||||||||||| || |||| Sbjct 68967 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 68908 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 |||| | ||||| | ||||||||| ||| |||||| || || || ||||| |||||| Sbjct 68907 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 68848 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA-- 36628 | | ||||| || | ||| |||| | || ||||||||||||| ||||||| ||| Sbjct 68847 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 68788 Query 36629 -AGCTGAGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 36686 |||| | ||| ||| |||| ||| || || | ||||| || || || ||||| || Sbjct 68787 AAGCT---ACACCTAATAAGAA-GTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 68732 Query 36687 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTC 36746 | ||| ||||| | | ||||||||||| | |||||||||||||| ||| || ||||| Sbjct 68731 AGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 68672 Query 36747 GATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 36806 || ||| | | || || | ||| ||||||||||| || | | || ||| | || Sbjct 68671 GAACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 68612 Query 36807 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 36866 || ||||| |||||||| ||||| || ||||| || || | || || || | || || Sbjct 68611 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCA 68553 Query 36867 G-TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925 | | |||||||| | || ||||||||||| || || ||||| || | || | || Sbjct 68552 GCTTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 68493 Query 36926 GTTGTTTGTACTTGTAACCCA 36946 ||| | ||| || || | ||| Sbjct 68492 GTTTTCTGTGCTAGTGATCCA 68472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150453177934136