Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq684 592 5e-165 >seq684 Length=114989 Score = 592 bits (656), Expect = 5e-165 Identities = 725/981 (74%), Gaps = 14/981 (1%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 |||| ||| || ||||||||||| || || ||||||||||||||||||||||| | | Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 |||||||| | | || ||||||||| | | | ||| |||| ||||| ||| Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTA---TCAACAACT 69329 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || |||||||| || ||||| | || || ||||| ||| ||||| | || || Sbjct 69328 GATTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTT 69269 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| | |||||| |||||| ||| ||||| Sbjct 69268 AACCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTG 69209 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || || || |||||||| | | |||||||| || || || || || ||||| || Sbjct 69208 AAACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAA 69149 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT--GTTT 5549 |||||||| ||||| || ||||| || || ||||| ||| || || || |||| Sbjct 69148 GTTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGA--TACACCGTCTTCAGTTT 69091 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 |||| || | ||| || |||||| || ||||| ||| ||| |||| |||||| | Sbjct 69090 CACGGATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAA 69031 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 | || ||||||||||| ||| ||||| || |||||||| || ||||||||||| |||| Sbjct 69030 ACACACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGA 68971 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| ||||| ||||| ||||||||||||||||| | ||||||||||||| ||| || | Sbjct 68970 ATACTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTAC 68911 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 | ||||||| ||||| | ||| ||||||| ||||| || || || ||||| | | Sbjct 68910 CTTGTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAG 68851 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 ||||| ||||||| || ||||| ||||| | ||| ||||||||||||| ||||||| || Sbjct 68850 CTACGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGT 68791 Query 5850 AAGCTGCGATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 | || | ||| |||||| ||||| || || || |||||||| || || || |||||| Sbjct 68790 AGCAAGCTACACCTAATAAG-AAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAA 68732 Query 5909 AGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTG 5968 |||||||| || | | || |||||||| | || |||||||| | ||||| ||||| Sbjct 68731 AGCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTA 68672 Query 5969 GAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACG 6028 || || || | ||| || |||| || ||||||||||| || | || ||||| || || Sbjct 68671 GAACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACT 68612 Query 6029 GGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA 6088 |||||||| || || ||||| || ||||| ||||| || | ||| || | || || ||| Sbjct 68611 GGTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCA 68553 Query 6089 G-TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 | | || || ||||| | || || |||||||| ||||| ||||| || | || | || Sbjct 68552 GCTTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACG 68493 Query 6148 GTTGTTGGTGCTAGTAACCCA 6168 ||| | |||||||| | ||| Sbjct 68492 GTTTTCTGTGCTAGTGATCCA 68472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152648360103624