Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq684 565 8e-157 >seq684 Length=114989 Score = 565 bits (626), Expect = 8e-157 Identities = 717/980 (73%), Gaps = 12/980 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| || |||||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | ||||||||||||||| || || | || | | |||||| ||||| Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGAT 69326 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || |||||||| || ||||| | || || ||||| ||| | ||| | ||| || | | Sbjct 69325 TGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAAC 69266 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| |||||| ||| || || || Sbjct 69265 CAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAA 69206 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || || || |||||||| | | |||||||| || || || || || ||||| || || Sbjct 69205 CTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTT 69146 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT--GTTTCAC 25810 ||||||||||| || ||||| || || ||||| |||| || || || ||||||| Sbjct 69145 TCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACA--CCGTCTTCAGTTTCAC 69088 Query 25811 GAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 25870 | || | || || |||||| |||||||| ||| |||||||| |||||| || | Sbjct 69087 GGATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACA 69028 Query 25871 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 25930 | || |||||||| ||||||||| || |||||||| || ||||||||||| || || | Sbjct 69027 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 68968 Query 25931 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 25990 | ||||| || |||||||| || || ||||| | |||||||||||||||||| || |||| Sbjct 68967 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 68908 Query 25991 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 26050 |||| | ||||| | ||||||||| ||| |||||| || || || ||||| |||||| Sbjct 68907 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 68848 Query 26051 CACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGT 26107 | | ||||| || | ||| |||| | || ||||||||||||| ||||||| || Sbjct 68847 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 68788 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 ||||| | || | | ||||| || || | |||||| || || |||||||| || | Sbjct 68787 AAGCT---ACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAA 68731 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 ||| ||||| | | ||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 68730 GCCATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAG 68671 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | || | | || |||| ||| ||||||||||| || | | || ||| | || | Sbjct 68670 AACTTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTG 68611 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | ||||| |||||||| ||||| || ||||| || || | || || || | || || | Sbjct 68610 GTTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAA-GCAG 68552 Query 26348 -TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGG 26406 | |||||||| | || ||||||||||| || || ||||| || | || | ||| Sbjct 68551 CTTGTAGCTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGG 68492 Query 26407 TTGTTTGTACTTGTAACCCA 26426 || | ||| || || | ||| Sbjct 68491 TTTTCTGTGCTAGTGATCCA 68472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151992365431984