Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq25 197 1e-45 >seq25 Length=633890 Score = 197 bits (218), Expect = 1e-45 Identities = 396/587 (67%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 29800 TTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCT 29859 ||||||| || || |||| |||||| || || || || || | ||||| | |||||| Sbjct 456324 TTCAGCGCGTCTACATGATTCAGGTACACATGTGCATCCCCAATCGTGTGAATGAACTCT 456265 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || | || | || ||| ||||| | || | || | ||| | ||| ||| || Sbjct 456264 CCGGCTTTCAAGCCACAGACTTGAGCTACCAAGCGTGTCAAGAGTGCGTAAGAGGCAATA 456205 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT 29979 || || || || || | ||||||||| | || | ||| || | |||||| ||||||||| Sbjct 456204 TTGAACGGCACACCCAACCCCATGTCTGCGGAACGCTGATACATCTGACAAGAGAGCTCT 456145 Query 29980 CCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAG 30039 ||||| |||||| || || || | |||| ||||| || || ||||| ||||| Sbjct 456144 CCGTCTGCCACGTAGAATTGGCAAAACATGTGACACGGCGGCAGGGCCATCTTTCCCAAA 456085 Query 30040 TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 30099 || |||||||||||| | || |||||||| | || |||||||||| | ||||| | Sbjct 456084 TCCGCGGGGTTCCAGGCCGATACAATGATGCGGCGATCCTCTGGGTTGTCCTTGATGGTG 456025 Query 30100 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30159 | || || ||| || | || | || | ||||||||| |||||||| Sbjct 456024 GTGATTGCCCGAGCCAACTGGTCGATGCCTTTGCCAGTGTAGTCTGCGTGCATGTCCGAA 455965 Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 ||||| || |||||||||| ||| ||||| ||||| || || |||| || ||||||||| Sbjct 455964 TACTCCGCCCCGAAATGCCGCCATTGGAAGCCGTAGACGGGGCCCAAATCCCCCTCTTCC 455905 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | ||| | |||| ||||||| | | || | || ||| |||||||||| Sbjct 455904 CGGTGAGAAAGGCCCAATTTGTCCAGATATTCCCGAGAGGAGTTCCCGTCCCAGATTCCA 455845 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 | ||||| | | || | | || || || || |||||||| || || Sbjct 455844 ATTTTTTTCTCCTTCAAATAATTCGCATCGGTCGATCCGGAGATGAACCACAAGAGTTCT 455785 Query 30340 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 || | || | ||||||||||| |||||| ||||| | |||||| Sbjct 455784 TCGGCCACCCCGCGCCAAAAGACCCGCTTGGTGGTGAGCAAGGGAAA 455738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408614193661532