Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 113 3e-20 seq3 109 4e-19 >seq4 Length=1364975 Score = 113 bits (124), Expect = 3e-20 Identities = 160/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||||||||||| || |||||| ||||| ||||| ||||| | | || || Sbjct 829207 CGCAGGACCAAATGTAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAACGTGCGCCCG 829266 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| || ||||| || || ||||| ||||| | ||| | ||||||||| Sbjct 829267 TCCTCCAGCTGCTTCCCCGCAAAAATGAGGCGCTGCTGATCAGGGGGGATACCCTCCTTG 829326 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || || ||| | | | || | |||||| || | ||| || Sbjct 829327 TCCTGAATCTTCTGCTTCACATTCTCGATCGTGTCACTGGGCTCCACGTCGAGCGTGATG 829386 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG-TGTA 48774 || || ||||||| || || ||||| || |||||| || |||| Sbjct 829387 GTCTTGCCCGTCAGCGTCTTAACAAAGATTTGCATCCTGCTGTA 829430 >seq3 Length=1384164 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| || | || |||||| ||||| ||||| ||||| || | || || Sbjct 138226 CGCAAGACCAAGTGCAAGGTTGACTCTTTCTGAATGTTGTAGTCAGACAGCGTGCGTCCG 138167 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| || || || || || ||||| ||||| | ||||| |||||||||| Sbjct 138166 TCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 138107 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||||||| || ||| | | | || | ||| || |||| || || Sbjct 138106 TCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAATGTGATG 138047 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || ||||||| || || || || |||||||| || Sbjct 138046 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGT 138009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934424408932