Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 2e-13 >seq25 Length=633890 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 39621 CCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATGATATGGCT 39680 ||||| |||||| | ||||| || || || |||||||| | ||| ||| | ||||| Sbjct 456041 CCAGAGGATCGCCGCATCATTGTATCGGCCTGGAACCCCGCGGATTTGGGAAAGATGGCC 456100 Query 39681 CTGCGTCCGTGTCAC-TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACA 39739 |||| ||||||||| ||||| | ||| ||| ||| |||| | || ||| || Sbjct 456101 CTGCCGCCGTGTCACATGTTT-TGCCAATTCTACGTGGCAGACGGAGAGCTCTCTTGTCA 456159 Query 39740 GTGGTATCAGCGTTCAGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGC 39799 | |||||||||||| | || | || || ||||||||||||| ||||| ||||| Sbjct 456160 GATGTATCAGCGTTCCGCAGACATGGGGTTGGGTGTGCCGTTCAATATTGCCTCTTACGC 456219 Query 39800 TCTCCTGAC 39808 ||| |||| Sbjct 456220 ACTCTTGAC 456228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570084725733920