Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq684 664 0.0 >seq684 Length=114989 Score = 664 bits (736), Expect = 0.0 Identities = 712/940 (76%), Gaps = 6/940 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||||||||| || ||||||||| || | |||| ||| |||||||||| Sbjct 68503 TCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACAAGCTGCTTCATCA 68562 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| |||||||||||||| ||||||||||||||| | ||||| || || || | Sbjct 68563 TCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGAT 68622 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 ||||| | || || |||||||| ||| | ||||| || |||| ||||| || ||||||| Sbjct 68623 CACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGTTCTAACGCTATTG 68682 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || |||||||||| || | |||||||| || || | || || ||| | || || |||| Sbjct 68683 GTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGGCTTTACAACGGTG 68742 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| |||||||||||| || |||||| | | || | | ||| || ||| Sbjct 68743 GTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTG 68802 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 | ||||||||| ||||| ||||| |||||||||||||| | || || | ||| || | Sbjct 68803 AATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTC 68862 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 ||||| |||||||| || || ||||| | || || |||| |||||| ||||||| Sbjct 68863 CAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTG 68922 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | ||||| ||||||||||| |||| |||||| || ||||||||||| | Sbjct 68923 ATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAAC 68982 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 ||||||| || |||||||| ||||||||| ||| || || ||||| || ||||| || Sbjct 68983 ACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTT 69042 Query 163079 TCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGC 163138 | || ||||| ||||||||||||||||| || ||| | | ||| | |||||| || Sbjct 69043 TATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACG 69102 Query 163139 AAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTG 163198 | || ||||||||||| || || |||||||||||||| ||||||||||| || | Sbjct 69103 GTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAG 69162 Query 163199 CTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTT 163258 |||| || || |||||||| || || |||||||| || ||| |||||||||||||||| Sbjct 69163 CTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTG 69222 Query 163259 CACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTG 163318 | | ||||||||| | ||||| | || || || | |||||||| ||||| | || Sbjct 69223 CTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAA 69282 Query 163319 TGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CG 163375 | || |||||||||||| | ||||| ||||||||||||||||| || ||||| | Sbjct 69283 TTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCC 69342 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGG 163435 |||| || ||||| |||||||| || || | ||| | || | | ||||||| Sbjct 69343 AAGGTCGT---GTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGG 69399 Query 163436 AAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 |||| |||||||| ||||| || ||||||||||| || || Sbjct 69400 AAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 69439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553080071124960