Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq684 652 0.0 >seq684 Length=114989 Score = 652 bits (722), Expect = 0.0 Identities = 722/956 (76%), Gaps = 10/956 (1%) Strand=Plus/Plus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 ||||| | || ||||||||||||| || | ||||| || || | || |||| || Sbjct 68490 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCTACATTATTAACAGCTACA 68549 Query 162979 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAG 163038 | ||| |||||| |||| ||| |||| || || || || || || || || |||||||| Sbjct 68550 AGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAA 68609 Query 163039 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 163098 || || ||||| ||||| | || || |||||||| ||| | ||||| ||| ||||| | Sbjct 68610 CCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCGGTTATTCCAAGT 68669 Query 163099 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 163158 || ||||| |||||| |||||||||| || | |||||||| || || | || || ||| Sbjct 68670 TCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAATGG 68729 Query 163159 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 163216 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 68730 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 68788 Query 163217 CATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTG 163276 | || ||||||||||||||||||||| || || ||||| ||||| || ||||| | | Sbjct 68789 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 68847 Query 163277 TAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTC 163336 |||| | ||| || || || || |||||| ||||| ||| | | || || |||| | Sbjct 68848 TAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTTAATTTACCCAATCGGAC 68907 Query 163337 AAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTG 163396 ||||| |||||||| | ||||| | || |||||||| || ||||||| |||| | | Sbjct 68908 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTACTTTCAACTTCATGTTAG 68967 Query 163397 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTG 163456 | ||||||||||| |||||||| || |||||||| ||||||||| || || ||||||| Sbjct 68968 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 69027 Query 163457 TCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCC 163516 | || |||||||| | ||| |||||||| || |||||| || ||| | ||| Sbjct 69028 TGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGTAACATCTAGTTTAATCC 69087 Query 163517 GTGAGACGACTGAA-ACTGAGTCACAA--AACTATGGTTACAAGTTTGGTCAAGAAGAAG 163573 |||| || |||| || | || | ||||| |||||||| ||||| |||||||||| Sbjct 69088 GTGAAAC---TGAAGACGGTGTATCTGCTAACTACGGTTACAAATTTGGACAAGAAGAAG 69144 Query 163574 AGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCAT 163633 | || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| ||| Sbjct 69145 AAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCAA 69204 Query 163634 CATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCT 163693 ||||||||| | | | ||||||||| | || || ||||| || || || |||| Sbjct 69205 GTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCT 69264 Query 163694 GGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 163753 |||| ||||| || || | ||||| |||||||||||| | ||||| ||||||||||||| Sbjct 69265 GGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAACGGATTCAACTTCAACC 69324 Query 163754 AGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCG 163813 | || | ||||| | || ||||||||| ||||||||||||| ||| | | ||||| | Sbjct 69325 AATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTG 69384 Query 163814 CTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 163869 ||| | | ||||||||||| ||||| || |||||||| ||||||||||| || ||| Sbjct 69385 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAT 69440 Score = 500 bits (554), Expect = 1e-136 Identities = 719/1011 (71%), Gaps = 2/1011 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | ||||||||||| || || ||| | || ||||| || | || | || Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || || || | ||| || |||| || ||| | || || || ||||||| || |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 ||||| ||||| | |||||||| || | || || ||| ||||| | || | |||||| Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTTAACTGTAGCTGT 38096 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || ||||| || |||||||||||| | | || | ||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || ||| ||| | || ||| |||||| ||| || || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTAT 164977 || || | ||||||| ||| | || || ||||| | || ||||| | ||||| Sbjct 38217 GGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTAT 38276 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 ||||| || ||||| ||||| || || || ||||| || || || || || ||| | Sbjct 38277 TCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCTT 38336 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 ||||| || | || || | |||||||| || ||||| ||||| || ||||| || Sbjct 38337 AATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTAT 38396 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 || ||||||| || ||| | ||||| ||||| |||||||| || || || ||||| || Sbjct 38397 TTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACAT 38456 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 ||||||||| ||||| || || || || ||| | ||||||| |||||||||| || || Sbjct 38457 GATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTGT 38516 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 ||||| ||||||| ||| ||||| || || ||||| || || || | || Sbjct 38517 AGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGCTTTCACACCAAC 38576 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 ||| |||||| |||||||| ||||| || || ||| | |||||||| || || || || Sbjct 38577 ACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTTGG 38636 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||||||||| || ||||||||||| |||||||| ||||| || || | || Sbjct 38637 TGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACAGG 38696 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||||| ||| |||| || | ||| | || | ||| | | || || || || Sbjct 38697 TTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGACTT 38756 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 || ||| ||| | | ||||| ||||||||||||||||| || ||||| || ||||| Sbjct 38757 TGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAAAA 38816 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 ||| |||| || ||||| | | | ||| |||| | || ||||| |||||||| Sbjct 38817 TATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAAAA 38876 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATAAAG 165628 ||| | |||||||| || || || || | || |||||||||||||| || Sbjct 38877 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATAGAG 38927 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 164048 TGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTAC 164107 ||||| || ||| |||||||| |||| || ||||||||| ||| |||| | ||| Sbjct 18869 TGTGATGACGATGAATACATTTTAGATGCTGCAGAAGAAAACGGATTTGAACTACCTTAT 18928 Query 164108 TCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGAT 164167 |||||| | ||||| |||| || | |||||||| | ||| ||| || ||||| Sbjct 18929 TCTTGTAGATCTGGTTCTTGTTCAACTTGTGCAGGACGTGTAGTAGGTGGTACAATTGAT 18988 Query 164168 CAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGT 164227 || || ||||| || |||| || ||||| |||||| ||||||||| | || ||| Sbjct 18989 CAATCAGAACAGTCGTTTTTAGAAGACGATCAAGTTGCAGAAGGATTCGTATTAACTTGT 19048 Query 164228 GTAGCATATCCAACATCTGATTGT 164251 || || ||||| ||||||||||| Sbjct 19049 GTTGCTTATCCCGCATCTGATTGT 19072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563204784557920