Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 284 2e-71 seq29 181 2e-40 >seq6 Length=1241202 Score = 284 bits (314), Expect = 2e-71 Identities = 976/1494 (65%), Gaps = 67/1494 (4%) Strand=Plus/Minus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||| | ||||| | ||||||||| ||||| ||||| ||||| Sbjct 394939 GTACATGTTCGATGTGAAAGGCTCAACAGACTCGTTGTTGCCCAGGATCTGCGCAGTAGA 394880 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC--GC-CGATGAG 213064 || || |||||||| || | || || ||| | || |||||||| || | ||| Sbjct 394879 TGCGGTAGGCATGGGTGCGAGCAATAGTGAGTTGCGGACACCGTGCTCCTGCACTTTGAA 394820 Query 213065 GCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACAT 213124 ||| || | | ||||||||||| | || || ||||| |||||| Sbjct 394819 GCGT--AAAC-CGGCCCAGTCCCAGCGAGTTGAGGGGG---------TCACGCCCCACAT 394772 Query 213125 GTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATG 213184 ||| || || |||| ||| ||||||| |||| ||| | | | |||||| || | Sbjct 394771 GTCGAATTGGAAGACGCCCTTGCTCATGGGGGAGCCGGCGAAGGTCTCGTAGGGACCCTC 394712 Query 213185 CTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTC 213244 || | | || | ||| ||||||| | || || |||| ||||| || || || || Sbjct 394711 CTTCATCGCGATCTCCATCGACGCCTCTACCGCCCCGAAGTACATGGTCTCGAAAATGTC 394652 Query 213245 CCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTG--GAACAC 213301 | |||| |||| || |||||| || ||| ||| ||| ||| ||| ||| ||| | Sbjct 394651 CTTGTTAAGCTGCTGGGCCTCCGGAGACTCGAATGGGAATCG-CATC--TTGATGAAGGC 394595 Query 213302 ATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGA 213358 || |||| ||||| || ||||| |||||||| | ||||| || ||| || | ||| Sbjct 394594 GTCCGCCAAACCCTGCACGCCGATCCCGATGGGGCGGTGTCGCATGTTCGAGCGCCTGGC 394535 Query 213359 GCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCAC 213418 ||||| | ||||| ||||| ||| |||| ||| ||||| || || |||| Sbjct 394534 T---TCCTCGACAGGGTAGTAGTTGATGTCTATGACGCGGTTCAGGTTTCGTGTCACCAC 394478 Query 213419 TTTGGTGA---CATGGGCCAGGTAC---TCGTGATTGAACA------------CGTAGCC 213460 || |||| ||| | | | | |||| | || | || |||| Sbjct 394477 CTTCGTGATTTCATACAGCCGCTGCAGGTCGTAAGTGGGCGTCTTCCCGCTACCGGAGCC 394418 Query 213461 CCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT- 213519 | | | || | || | | ||| | | |||||||||||| || || ||||| | Sbjct 394417 CTCCCCTTGGATGAATGCGGAAAGGTTCACGGAGGCCAGGTTGCAGACCGCGACCTCATC 394358 Query 213520 GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGT 213579 | | | | |||||||| |||||||| |||||||| ||| || ||||||||||| || Sbjct 394357 GGGCGAC-GTGTACTCGATGATCTCCGTGCACAGATTGGATGATTTGATGGTGCCCAAGT 394299 Query 213580 TCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCT 213639 |||| |||||||| || |||| | |||||| | |||||||| || | || |||| Sbjct 394298 TCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTTGAACAGCATGTAAGGCGTGCCTGTCT 394239 Query 213640 CTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC-GCCTGACA 213698 | | |||||| |||| ||| | |||||| | | |||||| | ||| || || Sbjct 394238 CCACCTGGGAGTCCAGAATCGCGAACCAGAGCTGCTGGGCCTTAATAACCTTGCGTGCTT 394179 Query 213699 GCTCCGGGCGTAGCCTCGTA-CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCT 213757 | || | | |||||| ||| ||||||||| ||| || || | ||| || || Sbjct 394178 TC-CCACTCTT---CTCGTAGCTGG-CGTAGAGCTGGTTAAACTCCTCGCCGCACACGTC 394124 Query 213758 GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTG-ACTC 213816 |||| ||||| || ||| || | ||| |||||||||||| |||| || | Sbjct 394123 CGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGACCAGTCCCCGTCG-CTCTCCACGC 394065 Query 213817 TCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCC-TGGTC-CTCCT-CT 213873 | ||||||||||||| || ||| || ||| |||||| || | || | |||| || Sbjct 394064 GCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAACAGATCACGTGCACGCTCCAACT 394005 Query 213874 CGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCT 213933 ||| || ||| || ||||| || || || ||||||||||| || ||||| |||| Sbjct 394004 CGTTG---CCGTGGTTCTTACGCAGGTCCAGGAATTCAAAGATGTCTGCATGCCAGGGCT 393948 Query 213934 CCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCC---GCCCTGGTCCACCAGCCTGGCCA 213990 | | ||||||||| |||| ||| | |||||| ||||||||| || | |||| Sbjct 393947 CTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCCCTGGTCGACGTAGCGGGCCG 393888 Query 213991 CCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTA 214050 |||||| | ||| || | ||||| | |||||||| ||||| | ||| | Sbjct 393887 TATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGAGGTGCCGTTCGATCCACGAA 393828 Query 214051 TATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGG 214110 | || ||| | |||| | |||| ||||| | || || ||||| || | |||| Sbjct 393827 TGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATACGCCAATCCCACCCGCAAATTTGG 393768 Query 214111 AGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGT 214170 | || ||||| || | | || || ||||||| | ||| ||| || | | | Sbjct 393767 AAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCCTCCTTCATGG 393708 Query 214171 TCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGC 214230 |||| | ||||||| ||||| ||||||| | | ||| | |||||||| || || Sbjct 393707 TCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCCGGCATTGAAAAGTGTAGGCG 393648 Query 214231 TGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGT 214290 | ||||| | | || ||| || | ||| ||||||||||||| | | | |||| Sbjct 393647 TAGCATGCGTGAAAAGTTTGAGCGACATGAGATTGTAGGTCTCCAGCGCCGCGTCAATGT 393588 Query 214291 CGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGT 214349 | |||||||| | || ||| | ||| | |||||||||||| | ||| || | Sbjct 393587 TCTCTTTGTGGATACCAATTGC-CACACGCATGATCATGTGCTGGGGGCGCTCCATAACT 393529 Query 214350 CCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 | | ||| || ||||| || ||||| || || || ||||||||| Sbjct 393528 ACCCCGTTCATCTTAAGAAGGTACGACTTTTCCAGCGTTTTAAAGCCAAAGTAG 393475 >seq29 Length=316797 Score = 181 bits (200), Expect = 2e-40 Identities = 522/792 (66%), Gaps = 22/792 (3%) Strand=Plus/Plus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 ||||||||||| || |||||||| | | | ||||| | | ||||||||||||||| Sbjct 130780 GCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCACAGA 130839 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 || | | ||||||||||| |||||| ||||| ||| |||| || |||||| Sbjct 130840 TTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCCTTG 130899 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 || ||||||||||| | || ||||| | ||| || ||| || ||| ||| | || Sbjct 130900 TACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGAT--GGCAAACCACAAGT 130957 Query 213673 ACCTGGCCTTG-ACCACCCGCCTGACAGCTCCGGGCGTAGCCT-CGTACTGTTCGTAGAG 213730 |||| | | || | | |||| ||| | | | | |||| | | || || Sbjct 130958 -CCTGAGCACGCACTGTCTTCTTGACT----CGGCCCTCTCGTTCGTATTTTAAATATAG 131012 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGACAG-GATGCGGGACACA 213786 || ||| | ||||| | | |||| || || || || ||| ||||||||| Sbjct 131013 GTCCCGGAAGGCCTGGCCGTGG---CAGTCCGCGAGACCGGGGCACTGAT-CGGGACACA 131068 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 ||||| |||| ||| || || || |||| |||||| ||||| || | ||| || Sbjct 131069 TGAGGGACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTC 131128 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | ||| || |||| | || | ||| ||| ||| ||| || ||||| || || | Sbjct 131129 CATAGAAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCA 131188 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG- 213965 |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| Sbjct 131189 CTTCAAAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGC 131248 Query 213966 --CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || ||||||||||| | ||| | || ||||| | || | ||| ||||| | Sbjct 131249 CTCCCCCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGAC 131308 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGG 214083 ||||| | || || || ||| || || | |||| || | | |||| | | Sbjct 131309 CGTTGCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCG 131368 Query 214084 AGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGA 214143 |||| || || || || || |||| |||| |||||| || ||| || || || Sbjct 131369 AGAGGCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGA 131428 Query 214144 TGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGG 214203 | || | || ||| || | | ||| | |||||| || | ||| || Sbjct 131429 TACCAACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTGCGGGAAAC 131488 Query 214204 ACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCC 214263 || ||| | || |||||| || ||| ||| ||||| | ||||||| | |||| Sbjct 131489 GCGTGCCCGCGTGGAAAAGAGTAGGGGAGGCGTGGATGAACCACTTGTTGCTCATGAGCT 131548 Query 214264 TGTAGGTCTCCA 214275 ||||||||||| Sbjct 131549 CGTAGGTCTCCA 131560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931524835394560