Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq29 165 2e-35 seq6 152 1e-31 >seq29 Length=316797 Score = 165 bits (182), Expect = 2e-35 Identities = 466/708 (66%), Gaps = 11/708 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || || |||||||| ||| | | || || || | |||||| || || || Sbjct 130780 GCCAGGTTGCAGACCGCCACCTCTTCCGCGCTCGTGTATTGGACGATCTCGGTGCACAGA 130839 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 || | |||||||||| |||| || | || || ||| | ||| |||||||||| Sbjct 130840 TTCGAGGACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCAGGTTGCAAGCGTCCTTG 130899 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| |||| ||| ||||| | ||| | ||| || ||| | || Sbjct 130900 TACAGCATGTAGGGCGTGCCCGTCTCAATCTGCGAGTCCAAGATGGCAAACCACAAGTC- 130958 Query 221894 CTG-GCGCTCACCGTCCTCTTGACT--GCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || | ||| ||| |||||||| || | |||| || | | || ||||| | Sbjct 130959 CTGAGCACGCACTGTCTTCTTGACTCGGCCCTCTCGTTCGTATTTTAAA---TATAGGTC 131015 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | | | | ||| || | || || || ||| |||||||||| || Sbjct 131016 CCGGAAGGCCTGGC--CGTGGCAGTCCGCGAGACCGGGGCACTGATCGGGACACATGAGG 131073 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||| | | || | ||||||| |||||||||||| || ||||| || | | Sbjct 131074 GACCAGGTCCCATCCTCCTCCACCCTCTCCATGAAGAGGTCGGGAATCCATAGTCCATAG 131133 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 |||||||| | | |||| ||||||| |||| ||| |||| ||| |||| | ||| Sbjct 131134 AAGAGATCCCGCGCCCGCGCCTCCTCCTTTCCGTGGTTCTTCCGCAGGTCCAGCACTTCA 131193 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || ||||| ||||||||||||||||| |||| ||| | || || || | |||| || Sbjct 131194 AAGATGTCCGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCCCCTGGCCTCTTGCCTCCC 131253 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| ||||| | | || ||| ||||| | || | || ||||| ||||| Sbjct 131254 CCCTGGTCCACGTAGCGCGCCGTGACGTCGAAGACCCTGAGCATGGGCACCAGACCGTT- 131312 Query 222251 GATCG-ACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACAT 222309 | ||| || || |||||||||||||| || ||| || | | ||| | | || | Sbjct 131313 GCTCGTCCCCTTCGTGCCCTTAATGTAGGCGCCGTGCGCGCGGATGTTGTGGACCGAGAG 131372 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 |||||| || || || || |||| |||||| ||| || ||||| ||| || Sbjct 131373 GCCGATTCCCCCCGCCGCCTTGCTTATCACGGCGCACTGCTTCAGCGTGTCGTAGATACC 131432 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 | || |||||| | | | | ||| || || || || |||||||| Sbjct 131433 AACGATCGAGTCCGCTTGCATGGCCAGGAGGAAGCACGAGGACATCTG 131480 >seq6 Length=1241202 Score = 152 bits (168), Expect = 1e-31 Identities = 600/935 (64%), Gaps = 19/935 (2%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||||||| || || || ||||| || || |||| |||||||| || || || Sbjct 394384 GGCCAGGTTGCAGACCGCGACCTCATCGGGCGACGTGTACTCGATGATCTCCGTGCACAG 394325 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| | |||||||| |||| || | || || || || | ||| |||||||| Sbjct 394324 ATTGGATGATTTGATGGTGCCCAAGTTCTGCTGGTTTGATTTCAGGTTGCAGGCGTCCTT 394265 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 | | ||||| | || ||| ||||||| ||| | |||||||| | |||||| | Sbjct 394264 GAACAGCATGTAAGGCGTGCCTGTCTCCACCTGGGAGTCCAGAATCGCGAACCAGAGCTG 394205 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 |||| || | ||| || ||| | | |||| || || | || |||||| Sbjct 394204 -CTGGGCCTTAATAACCT--TGCGTGCTTTCCCACTCTTCTCGTAGCTGGCGTAGAGCTG 394148 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 || ||||| || ||| || | || ||||||| || ||| | ||| || | || Sbjct 394147 GTTAAACTCCTCGCCGCACACGTCCGCCAGGCCCGGGCACTCGTTGGGGCAAAAAAGGGA 394088 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||||| | || | | || | | ||||||| ||||| || |||| || || | || Sbjct 394087 CCAGTCCCCGTCGCTCTCCACGCGCCGCATGAACAGGTCGGGCGTCCAGAGGGCGTAGAA 394028 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 ||||| | | |||| | ||| ||||| ||| || | ||| |||| || ||||| Sbjct 394027 CAGATCACGTGCACGCTCCAACTCGTTGCCGTGGTTCTTACGCAGGTCCAGGAATTCAAA 393968 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 ||||| || ||||| ||||| || |||| ||| | | || |||||| || || Sbjct 393967 GATGTCTGCATGCCAGGGCTCTAGGTAGATGGCGAAGGAACCCTTGCGCTTGCCTCCGCC 393908 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||| || || | || | ||||||| | ||| || | ||||| | |||||||| Sbjct 393907 CTGGTCGACGTAGCGGGCCGTATCGTTGAAAACGCGGAGCATAGGTACGATGCCGTTGGA 393848 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCC 222312 ||||| | || |||||| | | | |||| | ||| | || | ||| Sbjct 393847 GGTGCCGTTCGATCCACGAATGTAGGAGTCTCGCGCCCGAATGTTGTGGATGGATACGCC 393788 Query 222313 GATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTC 222372 || ||||| || ||| || || ||||| |||||| ||||| |||||| || Sbjct 393787 AATCCCACCCGCAAATTTGGAAATGGCAGCGCATTGCTTGAGGGTGTCGTAGATGCCGTC 393728 Query 222373 CATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACA 222432 || ||||||||||| | | |||| || || || || || | || | | | | Sbjct 393727 GATGGAGTCCTCCTTCATGGTCAGGAGGAAGCAGGAGGAGAGTTGGGGCCGCGGTGTGCC 393668 Query 222433 GGCGTTAAACAGCGTGGGACTGGC--GTGTGTAAAGT---AGCCCCTAGACATCAGATCG 222487 ||| || || || || || | || | ||| ||||| ||| ||||| |||| | Sbjct 393667 GGCATTGAAAAGTGTAGGCGTAGCATGCGTGAAAAGTTTGAGC-----GACATGAGATTG 393613 Query 222488 TACGTCTCTA-CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTA 222546 || ||||| | || | | | | ||||| || ||| || || || | |||| Sbjct 393612 TAGGTCTCCAGCGCCGC-GTCAATGTTCTCTTTGTGGATACCAATTGCCACACGCATGAT 393554 Query 222547 CATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCC 222604 ||||| |||||| | ||||| | ||| | | || ||| |||||||| |||||| Sbjct 393553 CATGTGCTGGGGGCGCTCCATAACTACCCCGTTCATCTTAAGA--AGGTACGACTTTTCC 393496 Query 222605 AGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 || || || || |||||||||| |||||||| Sbjct 393495 AGCGTTTTAAAGCCAAAGTAGTCATAATCAAAGTC 393461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928836858376960