Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq684 625 3e-174 >seq684 Length=114989 Score = 625 bits (692), Expect = 3e-174 Identities = 730/980 (74%), Gaps = 8/980 (1%) Strand=Plus/Plus Query 8257 TGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCA 8316 ||| ||||| || | || || || || |||| ||||| || ||| | |||||||| Sbjct 68472 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCT 68531 Query 8317 ACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGAC 8376 || | | | ||||||| |||||||| | ||| ||| | || || ||||| || || Sbjct 68532 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 68591 Query 8377 ATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCT 8436 ||||| || ||||| |||||||| |||||||| || | ||||| |||||||| ||| | Sbjct 68592 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 68651 Query 8437 GGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCC 8496 ||||| ||| |||| || |||||||| ||||| | ||||||||||| | |||||||| Sbjct 68652 GGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 68711 Query 8497 GCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTC 8556 || ||| | || || ||||| |||||||||||||||||||| |||||||| || |||||| Sbjct 68712 GCGTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 68771 Query 8557 CTCCTTGGCGT-CTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCAT 8615 | | || || |||| || ||||| ||||||||||||||| ||||| | || || Sbjct 68772 TTATTAGGTGTAGCTTGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGAT 68830 Query 8616 GCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCT 8675 |||||||||||| | || || | ||| ||||| || || || || ||| |||||| | Sbjct 68831 GCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTATTCTT 68890 Query 8676 TGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTAC 8735 | || || | || |||||| |||||||||||||||||| | |||||||| ||||| Sbjct 68891 AATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTGGTAC 68950 Query 8736 GTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACAT 8795 ||||||| ||| | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 68951 TTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATAT 69010 Query 8796 GCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGT 8855 | ||||||||||||||| || || |||||| | || |||||||| ||||| || || Sbjct 69011 GGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTCTTGT 69070 Query 8856 TACTTCTTCGCTGGTTCGTGAGACCACCGAA-ACCGAG--TCTCAAAACTATGGCTACAA 8912 || ||| | | ||||| || ||| || | | ||| ||||| || ||||| Sbjct 69071 AACATCTAGTTTAATCCGTGA---AACTGAAGACGGTGTATCTGCTAACTACGGTTACAA 69127 Query 8913 GTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTT 8972 || || |||||||| |||||||||||||| || || || || || |||||||| || || Sbjct 69128 ATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTT 69187 Query 8973 GATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTG 9032 ||||||||||| ||| ||| ||||| || | || || |||||| | ||||| || Sbjct 69188 AATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCTTG 69247 Query 9033 GCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAA 9092 ||| || || || |||||||| || || || || | || ||||| |||||| | || Sbjct 69248 GCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACTTAAA 69307 Query 9093 TGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGC 9152 || |||||||||||||| || || | || | ||||| || ||| ||||||| ||||| Sbjct 69308 CGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTTGGGC 69367 Query 9153 AGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAA 9212 ||| | | ||||| || | | ||||||||||| ||||||||| | ||||| ||||| Sbjct 69368 TGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 69427 Query 9213 CTTCCCGCTTGACCTTGCGG 9232 |||||| || || | |||| Sbjct 69428 CTTCCCTCTAGATTTAGCGG 69447 Score = 515 bits (570), Expect = 4e-141 Identities = 730/1021 (71%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 |||||| | | ||||||||| | ||||||||||| || || ||| | |||||||| || Sbjct 37906 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGT 37965 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 || | | ||||| || || | ||||||| ||||||| ||| | || || ||||| ||| Sbjct 37966 CTTTTATTATTTCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTT 38025 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || ||||||||| || ||| | || | |||| | ||||| ||| || ||| | Sbjct 38026 GTTACATCTTGGTACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGC-AACTTCTT 38084 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || | ||||| ||||| ||||| || |||||||||||| | | || | ||||| Sbjct 38085 AACTGTAGCTGTATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGG 38144 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 || ||| | || |||||||| || ||| | || | || ||| | ||| ||||||| Sbjct 38145 ACCAGAGGCACAAGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGT 38204 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || | || || || || | ||||| || || ||||| || ||||| | || | Sbjct 38205 CGCATTACATGGGGCATTTGGATTAATTGGATTCTGTTTACGACAATTTGAAATTGCTCG 38264 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 | | || || || || || ||||| || || ||||| || ||||| || || || || Sbjct 38265 TCTTGTAGGTATTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGT 38324 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||| | |||||||| | ||||| | |||||||||||||| || ||||| || Sbjct 38325 TTCTGTATTCTTAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGG 38384 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || || || |||||||| ||||| | ||| | || || || ||||| ||||| || || Sbjct 38385 AGTTGCAGCTATTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAA 38444 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 ||| ||||| |||||||| || || || || | || || || || |||| ||||| || Sbjct 38445 TCCATTCCACATGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCA 38504 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 |||| ||||||||||||||| | | ||||||| || || || || ||| || Sbjct 38505 TGGAGCTACTGTAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC 38564 Query 10474 TTTTGATAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 10532 ||| | | | || ||| |||||| || ||||| ||||| || || ||| | ||||||| Sbjct 38565 -TTTCACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGT 38623 Query 10533 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 10592 | || || ||||| |||||||| || ||||| |||||||||||||| ||| | |||| Sbjct 38624 CTCAAATTTTTGGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTG 38683 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 | || || | ||| | ||||| |||| |||| || | ||| | || | || | Sbjct 38684 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAA 38743 Query 10653 GTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 10712 | || || || ||||||||||||||| | | || | |||||||| |||||||| || | Sbjct 38744 GAGCATATGACTTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 38803 Query 10713 TCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACC 10772 ||||||| || |||||| | | ||||||||| || | |||||||||| || |||| Sbjct 38804 TCTATACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACC 38863 Query 10773 AACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGAT 10832 ||||||| |||| ||||| |||||||| || ||| | || | || || || || | || Sbjct 38864 AACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 38923 Query 10833 A 10833 | Sbjct 38924 A 38924 Score = 105 bits (116), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 15402 CGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAAA 15461 ||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||||| Sbjct 47099 CGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTCAAA 47158 Query 15462 TCCTGTATTCCCGACT 15477 |||||| |||||||| Sbjct 47159 TCCTGTCATCCCGACT 47174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 26435 ATAACTCAATCCCAAGTAGCTCAGTGGCAGAGCCGCCGACTGTTAATCGGCTGGTCGCTG 26494 |||| | ||||| ||||||||||||| ||||| || ||||||| || ||||||||| Sbjct 43248 ATAAATAAATCCTCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGTCGCTG 43189 Query 26495 GTTCAAATCCAGCCTTGGGAGTT 26517 |||||| |||||||| ||||||| Sbjct 43188 GTTCAAGTCCAGCCTGGGGAGTT 43166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516475584096000