Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq684 138 7e-27 seq9 95.1 8e-14 seq3 93.3 3e-13 >seq684 Length=114989 Score = 138 bits (152), Expect = 7e-27 Identities = 150/197 (76%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 |||||| | || || |||||||| || |||||||||||||| |||||| | |||||||| Sbjct 35327 AGTAACAAAAGCTGTTATTACTGTCCCTGCATATTTTAATGACTCTCAAAGACAAGCAAC 35386 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 ||||| || || | ||||||||| | | || |||||||||| |||||||||||||| Sbjct 35387 AAAAGACGCAGGTAAAATTGCAGGATTAGAAGTACTACGTATTATAAATGAACCAACAGC 35446 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTT 474906 || || ||||||||||| | || || || || || ||| || ||||||| || Sbjct 35447 CGCAGCTCTTGCTTATGGGTTAGACAAAAAATC---AAATGAAACAA---TTTTAATTTT 35500 Query 474907 TGATT---GTGGAGGTA 474920 ||||| |||| |||| Sbjct 35501 TGATTTAGGTGGTGGTA 35517 Score = 111 bits (122), Expect = 1e-18 Identities = 259/389 (67%), Gaps = 14/389 (4%) Strand=Plus/Plus Query 475771 TAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCA 475830 ||||||| ||| || || ||||||||||||| ||| || ||||||||| | | Sbjct 35996 TAAAAAGCCTAATTTAACGGTTAATCCTGATGAAGTTGTAGCTGTTGGAGCTGCGATTAA 36055 Query 475831 AGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGT 475890 | ||| |||| | ||| |||| |||| | | || || | | ||||| Sbjct 36056 TGGAGCAGTTTTGGCTGGT-----------GAAATTAAAGA-TGTTTTATTATTAGACGT 36103 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 ||| ||| | || ||||| |||||||| |||| || | ||||||| | ||||| || Sbjct 36104 AACACCATTATCTTTAGGAGTTGAAACAATTGGTGGTTTAATGACTAGAATGATTGAAAG 36163 Query 475951 AAATACTCCTATCCCATGCAA-AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAA 476009 |||||| | || ||| |||| |||| | || |||||| || || || ||| Sbjct 36164 AAATACAACAATTCCA-GCAACAAAAACTGAAACATTTTCAACAGCCGAAGACAACCAAC 36222 Query 476010 CAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAAC 476069 ||| ||| || || | | |||||||| | | | || |||||| || | Sbjct 36223 CAAAAGTAGATATTCATGTACTACAAGGTGAACGCTTACTTGCTTCAGATAACAAAAGTT 36282 Query 476070 TTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAG 476129 | ||| |||| | |||| |||| | |||| || |||||||| || |||||||||| Sbjct 36283 TAGGACATTTTGAACTTGGGAATATTTCAGCTGCCCCTAGAGGAGTACCACAAATTGAAG 36342 Query 476130 TTACTTTTGATATTGATGCAAATGGTATT 476158 | || |||||||| || ||| |||| ||| Sbjct 36343 TAACATTTGATATAGACGCAGATGGAATT 36371 Score = 104 bits (114), Expect = 2e-16 Identities = 215/314 (68%), Gaps = 17/314 (5%) Strand=Plus/Minus Query 290647 AACAAAATTCATTATTTCATAATCAATATCTTCTCCACCCAAATAAGAATTACCTGTCAT 290706 |||| | |||||||| | | |||| ||| || ||||| || | || |||| | | Sbjct 35630 AACATACTTCATTATAGCGGAGTCAAAATCATCACCACCTAAGTGGCTATCTCCTGCCGT 35571 Query 290707 AGCTAATGTTCTAAATAAACCGTCATTAATATTCATTAAT-GAAATATCTAATGTTCCTG 290765 |||||| | ||||| ||| || || ||| ||| |||| || ||||| || Sbjct 35570 TGCTAATACTTCAAATACACCATCCCCAAC-TTCTAAAATAGAAACGTCAAATGTACCAC 35512 Query 290766 CACCAAAATCGTATATAATAACATTACCTCCATTTTTATTTGTCCAAGTTTTGCTTCCAA 290825 |||| ||||| | || ||| ||| ||| ||||| | ||||| || || Sbjct 35511 CACCTAAATCAAAAAT--TAAAATTG-------TTTCATTTG---ATTTTTTG--TCTAA 35466 Query 290826 GACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTG 290885 ||||| | | | || |||||||||||||||||||| | || ||| || | |||| Sbjct 35465 C-CCATAAGCAAGAGCTGCGGCTGTTGGTTCATTTATAATACGTAGTACTTCTAATCCTG 35407 Query 290886 CAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTG 290945 ||||||| | | ||| ||||| || | ||| | ||||||||||| |||||||| | Sbjct 35406 CAATTTTACCTGCGTCTTTTGTTGCTTGTCTTTGAGAGTCATTAAAATATGCAGGGACAG 35347 Query 290946 TAATAACAGCTTTT 290959 |||||||||||||| Sbjct 35346 TAATAACAGCTTTT 35333 >seq9 Length=1164708 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| || |||||||| || || || |||||||| || || || ||||| Sbjct 608020 ATCCTCGAGCTGCTTGCCGGCAAAAATGAGGCGCTGCTGATCAGGGGGGATCCCCTCCTT 608079 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||| || |||||||| || ||| ||||| || || || | | | | ||| | ||| Sbjct 608080 GTCCTGGATCTTTTGCTTCACATTCTCAATGGTGTCGCTGGGCTCCACGTCCAAAG-TAA 608138 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||||||||||||||| Sbjct 608139 TGGTCTTGCCCGTCAGGGTCTTAACGAAAATTTG 608172 >seq3 Length=1384164 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || |||||||| || ||||| || || || ||||| || ||||| || |||||| Sbjct 138166 TCTTCCAGCTGCTTTCCTGCGAAAATTAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 138107 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAAT 480736 |||||||||||||| || ||| ||| || ||||| || | | | | ||| || || Sbjct 138106 TCTTGAATCTTTTGCTTCACATTTTCGATGGTATCGCTGGGCTCGACATCCAA-TGTGAT 138048 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 138047 GGTCTTGCCCGTCAGGGTCTTGACGAAGATCTG 138015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268149859921232