Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq684 738 0.0 >seq684 Length=114989 Score = 738 bits (818), Expect = 0.0 Identities = 756/976 (77%), Gaps = 16/976 (2%) Strand=Plus/Plus Query 160885 TGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCC 160944 ||| |||| ||||| || ||||| | || | ||||||||||| || | ||||| ||| Sbjct 68472 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGAT-CCC 68530 Query 160945 TGC-TTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGA 161003 | | || | | ||||| | || |||||||| || ||| | | || || || || || Sbjct 68531 TACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGA 68590 Query 161004 CATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTC 161063 ||||| || || |||||||| || ||||| || || | || ||||||||||| ||| | Sbjct 68591 TATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCAC 68650 Query 161064 TGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGC 161123 ||||| ||||| || |||||||||||| ||| | ||||||||||| | |||||||| Sbjct 68651 AGGTGCGGTTATTCCAAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGC 68710 Query 161124 AGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCAC 161181 || ||||| ||||||||||| |||||||||||||||| |||||| || || || ||| Sbjct 68711 TGC--GTCTGTAGACGAATGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACAC 68768 Query 161182 TTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGG 161239 ||| | | || | || |||| ||||||| ||||| ||||||||| |||||| | | Sbjct 68769 TTCTTATTAGGTGTAGCT-TGCT-ACATGGGACGTGAATGGGAACTTAGCTACCGTTTAG 68826 Query 161240 GAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGT 161299 | |||||||||||||||| |||||| | ||| ||||| || |||||||| |||||||| | Sbjct 68827 GGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCAAGTGCAGTAT 68886 Query 161300 TCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTG 161359 || | | || || |||| |||||| |||||||||| |||||| | || ||||||| Sbjct 68887 TCTTAATTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATCTCTG 68946 Query 161360 GTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCC 161419 |||| ||||||| |||| | || ||||||||||| ||||||||||| |||||||| |||| Sbjct 68947 GTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCC 69006 Query 161420 ATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGC 161479 ||||| || || || ||||||||||| || ||| | |||||||||||||||||||| | Sbjct 69007 ATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCAATGCACGGTTCTC 69066 Query 161480 TGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGA-GTCCCAG--AACTATGGTT 161536 | || || ||| | | |||||||| ||| ||| || | | ||||| |||| Sbjct 69067 TTGTAACATCTAGTTTAATCCGTGAAACT---GAAGACGGTGTATCTGCTAACTACGGTT 69123 Query 161537 ACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTC 161596 |||| || || ||||||||||| || ||||||||||| ||||| ||||| ||||| || | Sbjct 69124 ACAAATTTGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGAC 69183 Query 161597 GTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTG 161656 || | || ||||||||||| ||||||||||| || | | ||||||||| | |||| Sbjct 69184 GTTTAATCTTCCAATACGCAAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTG 69243 Query 161657 CTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACC 161716 ||||||| ||||| || |||||||| ||||| || || | ||||| |||||||||||| Sbjct 69244 CTTGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGAATTAGCACAATGGCATTCAACT 69303 Query 161717 TGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCT 161776 | || || |||||||||||||| || | |||||||| || ||| || |||||||| | Sbjct 69304 TAAACGGATTCAACTTCAACCAATCAGTTGTTGATAGCCAAGGTCGTGTGATCAACACTT 69363 Query 161777 GGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTC 161836 |||| ||| || |||||||||||| | | || |||||||| |||||||| || || || | Sbjct 69364 GGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGC 69423 Query 161837 ACAACTTCCCTCTTGA 161852 ||||||||||||| || Sbjct 69424 ACAACTTCCCTCTAGA 69439 Score = 578 bits (640), Expect = 4e-160 Identities = 739/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| | | ||| Sbjct 37918 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGTCTTTTATTATTT 37977 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 162248 || || || | |||||| |||| || ||| | || || |||||||| || || |||| Sbjct 37978 CCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACTACTTTTGTTACATCTTGG 38037 Query 162249 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGT 162307 || || || ||| | || ||| || | ||||| ||||| ||| | |||| || || Sbjct 38038 TACACACATGGATTAGCTTCTTCTTACTTAGAGGGATGCAA-CTTCTTAACTGTAGCTGT 38096 Query 162308 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 162367 || || || ||| | |||||||||||| | | | ||||||| || ||| | || Sbjct 38097 ATCAACACCTGCAAATAGTATGGGTCATTCATTGATCTTATTATGGGGACCAGAGGCACA 38156 Query 162368 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 162427 ||| || || | || ||| ||| | || ||| | ||||||||||| || | || || Sbjct 38157 AGGAGATTTTACTCGTTGGCTTCAAATAGGTGGATTATGGACTTTTGTCGCATTACATGG 38216 Query 162428 AGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGTA 162486 || |||| | | || || ||| || || || || |||||| | || || ||| | |||| Sbjct 38217 GGCATTTGGATTAATTGGATTC-TGTTTACGACAATTTGAAATTGCTCGTCTTGTAGGTA 38275 Query 162487 TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 162546 ||||||| || ||||| ||||| || ||||| ||||| || ||||||||| ||| || Sbjct 38276 TTCGTCCGTATAATGCAATTGCATTTTCAGGACCTATCGCAGTATTCGTTTCTGTATTCT 38335 Query 162547 TTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAA 162606 | ||||||||||| |||||| | |||||||| || || || || || ||||| | Sbjct 38336 TAATCTATCCTTTAGGACAAGCAAGTTGGTTCTTTGCTCCTAGTTTTGGAGTTGCAGCTA 38395 Query 162607 TCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACA 162666 | ||||||||||| | ||| | ||||| |||||||||||||| || ||||| || |||| Sbjct 38396 TTTTCCGATTCCTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCACA 38455 Query 162667 TGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAG 162726 ||||||| |||||||| || | ||||||||| | | ||||| |||||||||| || | Sbjct 38456 TGATGGGTGTAGCAGGAATTTTAGGTGGTGCACTATTATCTGCAATTCATGGAGCTACTG 38515 Query 162727 TTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCC- 162785 | ||||| ||| | | ||||||||| || || || || || || ||| || || Sbjct 38516 TAGAAAACACATTATTCGAAGATGGTGATGCTGCGAATACATTCCGTGC-TTTCACACCA 38574 Query 162786 ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTC 162845 ||||| |||||||| ||||| ||||| || |||||| | |||||||| || ||||| Sbjct 38575 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAACAGATTCTGGTCTCAAATTTTT 38634 Query 162846 GGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATG 162905 ||| |||||||| |||||| |||||| | |||||||| ||| | |||||||| || | Sbjct 38635 GGTGTTGCTTTTTCTAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCAGTAACA 38694 Query 162906 GGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGAC 162965 ||| | |||||||||||| | ||||| | || | || | || | | || || ||| Sbjct 38695 GGTTTATGGACAAGTTCTTTTGGTATAGTAGGTTTAGCATTAAACTTAAGAGCATATGAC 38754 Query 162966 TTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAG 163025 |||||||||||||| ||||||| || ||||| || || ||||| || |||||||| || Sbjct 38755 TTTGTATCTCAAGAGCTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTATACTAAA 38814 Query 163026 AACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAG 163085 || || | | || ||||| || || ||||| | || || ||||||||| ||||| Sbjct 38815 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAGGACCAACCACATGAA 38874 Query 163086 AACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTATGATA 163135 || ||||| ||||| || ||||| || ||| | || ||||| || | ||| Sbjct 38875 AATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38924 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 157687 TTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTC 157746 ||||||| |||||||||| ||||||||||| ||||||||||||| | ||| ||||||| Sbjct 47096 TTACGGGATGTAGCGCAGTTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCACAGGTTC 47155 Query 157747 GAATCCTGTCACCCCGACTT 157766 |||||||||| |||||||| Sbjct 47156 AAATCCTGTCATCCCGACTT 47175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547742516761440