Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq684 486 6e-133 >seq684 Length=114989 Score = 486 bits (538), Expect = 6e-133 Identities = 700/979 (72%), Gaps = 10/979 (1%) Strand=Plus/Minus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 ||||||||||| |||||||| || || ||||| |||||||| ||||| | || | | | Sbjct 69445 GCTAAATCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCA 69386 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTG-CTACAATGGA 17953 || | ||||| | ||||||||| || | || | ||| ||| | |||| || Sbjct 69385 GCACGGTTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTG-GCTATCAACAACTGA 69327 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 |||||||||||||||||| || | || || ||||| ||| ||||| | || || | Sbjct 69326 TTGGTTGAAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAA 69267 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGTTAA 18072 ||| || | || ||||||||||| |||||||| |||| | | | || ||||| | Sbjct 69266 CCAGATACCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAG-TTGTTGA 69208 Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132 | || || || |||||||| | | |||||||| || || || || || || || || | Sbjct 69207 AACTTGCGTATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAG 69148 Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC 18192 | ||||||||||| |||||||| || || ||||| ||| || || ||||| | Sbjct 69147 TTTCTTCTTCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTTTCAC 69088 Query 18193 TAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 || | || || |||||| |||||||| ||| |||||||| |||||| || | Sbjct 69087 GGATTAAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACA 69028 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || |||||||| ||||||||| || |||||||| || |||||||| |||||||||| Sbjct 69027 CACCAGCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATA 68968 Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372 | |||||||| ||||||||||| ||||| | |||||||||||||||||| || |||| Sbjct 68967 CTAACATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTT 68908 Query 18373 GTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAA 18432 |||| | || |||| | ||||||| || || |||||||| || || |||| | Sbjct 68907 GTCCGATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTA 68848 Query 18433 CACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAG 18492 | ||||||| || ||||| |||| | || ||||||||||||| ||||||||||| Sbjct 68847 CGAAAATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTAGC 68788 Query 18493 CTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 18552 || | || | | ||||| || || | ||||| || || || ||||| || | || Sbjct 68787 AAGCTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCC 68728 Query 18553 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 18612 | ||||| | | ||||||||||| | |||||||||||||| ||| || |||||||| Sbjct 68727 ATTCGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAAC 68668 Query 18613 ACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCT 18672 || | | || |||| || ||||||||||| || | | | ||| | || || | Sbjct 68667 TTGGAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTT 68608 Query 18673 CACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA--AAAATGC-TG 18729 |||| |||||||| || || || ||||| || || | || || || | || || || Sbjct 68607 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTG 68548 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 ||||| ||||| | || ||||||||| | || || ||||| || | ||| | |||| Sbjct 68547 TAGCT---GTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGT 68491 Query 18790 TGTTTGTACTCGTAACCCA 18808 | | ||| || || | ||| Sbjct 68490 TTTCTGTGCTAGTGATCCA 68472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151317170916296