Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq684 677 0.0 >seq684 Length=114989 Score = 677 bits (750), Expect = 0.0 Identities = 725/961 (75%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || ||||||||||| |||||||| |||||||| ||||||||||| | | |||| ||| Sbjct 69439 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 69380 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 |||| || ||| ||||| ||||| | ||||||||| || | ||||| | || |||||| Sbjct 69379 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 69320 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360 |||||||||||||| | |||||| ||||| ||||||| ||||| || || ||||||||| Sbjct 69319 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 69260 Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420 || || ||||| | ||||||||||| |||| Sbjct 69259 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 69200 Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 ||||||||||| ||||| || |||||||| || || |||||||||||||| || ||||| Sbjct 69199 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 69140 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCA--GT-TTCAGTCGTCTCACGAACC 103537 |||||||| || |||||||| ||||| |||| || || |||||| ||||| | Sbjct 69139 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTT---TCACGGATT 69083 Query 103538 AGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCA 103597 | || || ||||| ||||||||||| |||||||| | || ||||| || || ||| Sbjct 69082 AAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACACACCA 69023 Query 103598 GCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGC 103657 ||||| || ||| ||||| |||||||| |||||||| ||||| |||||||| || | | Sbjct 69022 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 68963 Query 103658 ATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCA 103717 ||| ||||||| || || || ||||| ||||||||| |||| ||||| |||||| || Sbjct 68962 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 68903 Query 103718 AAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAG 103777 | ||||| | ||||||||||| || || || || ||||| ||| | || || | Sbjct 68902 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 68843 Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| || ||||| || | ||||||| | |||||| ||||||||||| || ||| || Sbjct 68842 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCA-AG 68785 Query 103838 ATGC--CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACT 103895 | | | | | |||||| ||||||||||||||| ||||||||||||| || ||||| | Sbjct 68784 CTACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATT 68725 Query 103896 CATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGG 103955 | || | ||| || |||||||||| || |||||||||| |||||| ||||| || | Sbjct 68724 CGTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTG 68665 Query 103956 GAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCAC 104015 ||| ||| ||||| | ||| |||||||| ||||| | ||||| ||||| || ||||||| Sbjct 68664 GAATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCAC 68605 Query 104016 GAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCAGATGGTTG 104075 | || || |||||||| || ||||||||||| | |||||| | |||||||||| | || | Sbjct 68604 GGATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAG 68545 Query 104076 CCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTG 104135 | | || | || |||||||| | |||||||||||||| | || | |||||| | || Sbjct 68544 CTGTTAATAATGTAGGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTG 68485 Query 104136 T 104136 | Sbjct 68484 T 68484 Score = 574 bits (636), Expect = 6e-159 Identities = 743/1021 (73%), Gaps = 4/1021 (0%) Strand=Plus/Minus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || ||||| || | ||| || ||||| || || |||||||| |||||||| ||| Sbjct 38924 TATTAAAGGGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 38865 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 || || || |||| ||||| | | |||||| || |||| ||| || || || ||| Sbjct 38864 TGGTCCTGTGCGGCCATCCATGATCTAATACCTTCGTTTAATAAGATATTTTTAGTATAG 38805 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || || || || ||||||||||| ||||| | | |||||| |||||||||||||| || Sbjct 38804 AAAGTTTCAAATTCTGGATCTTCAGCTGCACGAAGCTCTTGAGATACAAAGTCATATGCT 38745 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 | | ||| | || | ||| | ||||| | ||||||||||| | ||| | || ||| Sbjct 38744 CTTAAGTTTAATGCTAAACCTACTATACCAAAAGAACTTGTCCATAAACCTGTTACTGGA 38685 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | ||| |||||||| | ||| | || ||| ||| |||| |||||| |||||| Sbjct 38684 ACAAATAACATGAAGAAATGAAGCCAACGTTTGTTAGAAAAAGCAACACCAAAAATTTGA 38625 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 |||||||| | ||| ||||| |||||||||||||| ||||| |||||| | ||| Sbjct 38624 GACCAGAATCTGTTCGCTGTTACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTGAAA 38565 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||| || || || |||||||||||| | | ||||| || ||||| | || Sbjct 38564 GCACGGAATGTATTCGCAGCATCACCATCTTCGAATAATGTGTTTTCTACAGTAGCTCCA 38505 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || ||||| || | ||||| || || | || ||||| ||||||||||| |||||||| Sbjct 38504 TGAATTGCAGATAATAGTGCACCACCTAAAATTCCTGCTACACCCATCATGTGGAATGGA 38445 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || || |||||||||||||| || |||| ||| | |||||||| || || |||||||| Sbjct 38444 TTAAGTGTCCAGTTATGGAAACCTTGTAAGAATAATAGGAATCGGAAAATAGCTGCAACT 38385 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || |||||||||||||| | ||||| | ||||||||| | || ||| Sbjct 38384 CCAAAACTAGGAGCAAAGAACCAACTTGCTTGTCCTAAAGGATAGATTAAGAATACAGAA 38325 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 || || || |||||||| || || || ||||| ||||| ||||||||||| || | | Sbjct 38324 ACGAATACTGCGATAGGTCCTGAAAATGCAATTGCATTATACGGACGAATACCTACAAGA 38265 Query 102364 CTAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 | ||| | || ||||| || || || ||| ||||| | ||||||| || || | || Sbjct 38264 CGAGCAATTTCAAATTGTCGTAAACA-GAATCCAATTAATCCAAATGCCCCATGTAATGC 38206 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 ||||||| ||| | ||| || | ||| | ||| | ||||||||||| || || || Sbjct 38205 GACAAAAGTCCATAATCCACCTATTTGAAGCCAACGAGTAAAATCTCCTTGTGCCTCTGG 38146 Query 102483 ACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGT 102542 ||||| | || | | |||||||||||| | ||||| ||||| ||||| | || Sbjct 38145 TCCCCATAATAAGATCAATGAATGACCCATACTATTTGCAGGTGTTGATACAGCTACAGT 38086 Query 102543 AAGGAAATTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAG 102601 | ||| || ||| || || | |||| ||| || | || || || ||||| || ||| Sbjct 38085 TAAGAAGTT-GCATCCCTCTAAGTAAGAAGAAGCTAATCCATGTGTGTACCAAGATGTAA 38027 Query 102602 CAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTA 102661 |||| || || || || | ||| || |||| ||| ||| | || || ||||| | | | Sbjct 38026 CAAAAGTAGTACCTGTTAACCATCCACCAACTGCAAGAAATGCTGTTGGAAATAATAAAA 37967 Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAA 102721 | || |||||||| | ||| || || ||||||||||| | ||||||||| | | ||||| Sbjct 37966 GACCTGACCAACCAATAAATACGAAACGATCTCGTTTTAACCAGTCATCGACTAAGTCAA 37907 Query 102722 A 102722 | Sbjct 37906 A 37906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633508183458720