Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq684 535 1e-147 >seq684 Length=114989 Score = 535 bits (592), Expect = 1e-147 Identities = 718/991 (72%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || ||||||||||| ||||| || || ||||| || || | || | | |||||| Sbjct 69439 TCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGG 69380 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | |||||||||||| ||||||||||| | || | | | | | |||||||| Sbjct 69379 TTGATAATGTCAGCCCAAGTGTTGATCACACGACCTTGGCTATCAACAACTGATTGGTTG 69320 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 |||||||| || || |||||||| ||||| || | ||||| |||| ||||| ||| Sbjct 69319 AAGTTGAATCCGTTTAAGTTGAATGCCATTGTGCTAATTCCAAGAGCAGTTAACCAGATA 69260 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 |||||||| ||||| ||||| | ||||| || | | ||| || || || || || || Sbjct 69259 CCTACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGCACGTGAGTTGTTGAAACTTGCG 69200 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| | || ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 69199 TATTGGAAGATTAAACGTCCAAAGTAACCGTGTGCAGCTACGATGTTGTAAGTTTCTTCT 69140 Query 21777 TCTTGACCAAACTTGTAACCATAGTT--CTGTGAAACC-TCTTCAGTCGTCTCACGAATG 21833 ||||| ||||| |||||||| ||||| | | | ||| |||||||| ||||| || Sbjct 69139 TCTTGTCCAAATTTGTAACCGTAGTTAGCAGATACACCGTCTTCAGTT---TCACGGATT 69083 Query 21834 AGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCG 21893 | || || || || ||||||||| ||| ||| ||| |||||||| || || Sbjct 69082 AAACTAGATGTTACAAGAGAACCGTGCATTGCACTGAATAAAGATCCACCAAACACACCA 69023 Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| ||| || || || ||||||||||| ||||| || || ||||| || | | Sbjct 69022 GCAACACCAGCCATATGGAATGGGTGCATAAGAATGTTGTGTTCTGCTTGGAATACTAAC 68963 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCA 22013 ||| ||||||| || || || || || || |||||| ||||||| || || ||||| Sbjct 68962 ATGAAGTTGAAAGTACCAGAGATACCTAAAGGCATACCATCAGAGAAGCTACCTTGTCCG 68903 Query 22014 AACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAG 22073 | || |||| | ||| || ||| | || || || || ||||| ||| | || || || Sbjct 68902 ATTGGGTAAATTAAGAATACTGCACTTGCTGCAGCTACTGGAGCTGAGAAAGCTACGAAA 68843 Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG 22133 ||||| || | |||||||| || |||||||||||||| || ||||||||||| |||| Sbjct 68842 ATCCAAGGACGCATCCCTAAACGGTAGCTAAGTTCCCATTCACGTCCCATGTA-GCAAGC 68784 Query 22134 -ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTC 22192 || || | | |||||| ||||| |||||| | ||||| |||||||| |||||||| Sbjct 68783 TACACCTAATAAGAAGTGTAATACTACAAGTTGGTAAGGACCACCGTTGTAAAGCCATTC 68724 Query 22193 ATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGG 22252 || | | ||||||||||||| |||||||||||| | || || || ||| || || Sbjct 68723 GTCTACAGACGCAGCTTCCCAAACTGGGTAGAAGTGAATACCAATAGCGTTAGAACTTGG 68664 Query 22253 AACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCG 22312 || || || |||| || |||||||| || || || || || ||||| || ||||| || Sbjct 68663 AATAACCGCACCTGTGATAATGTTGTTTCCGTATAAAAGTGATCCAGCCACTGGTTCACG 68604 Query 22313 GATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 ||| |||||||| || || || ||||| | | || ||||| || || || ||||||| Sbjct 68603 GATACCATCGATATCTACTGGAGGTGCTGCGATGAAAGCGATGATGAAGCAGCTTGTAGC 68544 Query 22373 -GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAG 22431 | || | | | || ||||| | || |||||||| || | || | |||||| | | Sbjct 68543 TGTTAATAATGTA-GGGATCATTAAAACACCGAACCAACCGATGTATAAACGGTTTTCTG 68485 Query 22432 TAGAGGTGACCCAGGAACAAAACTGCTCCCA 22462 | |||| ||| || || || ||||||| Sbjct 68484 TGCTAGTGATCCAAGAGCAGAAGCGCTCCCA 68454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146206812425520