Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20gaditana_20[genbank_20GCA_5F000569095.1_202014-02- 18] 684 sequences; 27,589,342 total letters Query= NC_020839.1 Length=39573 Score E Sequences producing significant alignments: (Bits) Value seq469 111 4e-20 >seq469 Length=644 Score = 111 bits (122), Expect = 4e-20 Identities = 212/309 (69%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 23097 CGCTGGTATAGTCCGTCGCGCAGCGCCTGATCGAAATCGATCCGCATGTGTTGATGCGGC 23156 |||| || |||||| || ||||| | ||| ||||||||| ||| |||| Sbjct 493 CGCTCATAGAGTCCGGCGTCGAGCGCGTCGCGGAAGGTGATCCGCATCGTCTGAC-CGGC 435 Query 23157 GAGC--GCCCGGCGAGGATGTCCTGGATCGCCTGGTTGAACGGGTTTTCGGTGCCGTTAT 23214 | || ||||| | | |||||||| || | |||||||| || |||||| | Sbjct 434 GCGCTTGCCCGTCTTG-ATGTCCTGAATGAGCAAATTGAACGGATTCGAAATGCCGTCGT 376 Query 23215 GCGTCGAGCATACGACCACCTGCCCGCCCCACATCAGGAAGGCGAGCGCGGCCTTGAGCA 23274 | ||||| || || |||||||| ||||| || || || || | ||| ||||||| | Sbjct 375 GGGTCGAAATCACAACGACCTGCCCACCCCAGATTAGCAACGCCATCGCCGCCTTGATTA 316 Query 23275 GCTCGTCGAGGCTATCGACGAAGGCAGCCTCATCGATGATGACCATACCCTGCTTGCCGC 23334 ||| | | | | | ||| || ||||| ||||||||||| || ||||||||||||| Sbjct 315 CTTCGGCAACATTCTTGTGGAACGCCGCCTCGTCGATGATGACGATGCCCTGCTTGCCGC 256 Query 23335 GCAGCCCGCGCGGCGCAGAGCTGAGGGCGAGGATCTCGAAGCCAGATGCGAAGCGGATCC 23394 ||| | ||||||| | ||| || ||| || ||| || || |||||||||||| Sbjct 255 GCAACGCGCGCGGGACGGAGGGAAGCGCGGTAATGCGGAAACCCGACGCGAAGCGGATCG 196 Query 23395 GGAATGCTT 23403 ||| |||| Sbjct 195 AGAAGGCTT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126510972406280